KEGG   Dichomitus squalens: DICSQDRAFT_178559
Entry
DICSQDRAFT_178559 CDS       T03133                                 
Name
(RefSeq) RNA polymerase II
  KO
K03012  DNA-directed RNA polymerase II subunit RPB4
Organism
dsq  Dichomitus squalens
Pathway
dsq03020  RNA polymerase
dsq03420  Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:dsq00001]
 09120 Genetic Information Processing
  09121 Transcription
   03020 RNA polymerase
    DICSQDRAFT_178559
  09124 Replication and repair
   03420 Nucleotide excision repair
    DICSQDRAFT_178559
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:dsq03021]
    DICSQDRAFT_178559
   03400 DNA repair and recombination proteins [BR:dsq03400]
    DICSQDRAFT_178559
Transcription machinery [BR:dsq03021]
 Eukaryotic type
  RNA polymerase II system
   RNA polymerase II
    Pol II specific subunits
     DICSQDRAFT_178559
DNA repair and recombination proteins [BR:dsq03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    TCR (transcription coupled repair) factors
     DNA-directed RNA polymerase II complex
      DICSQDRAFT_178559
SSDB
Motif
Pfam: RNA_pol_Rpb4
Other DBs
NCBI-GeneID: 18840649
NCBI-ProteinID: XP_007362844
JGI: 178559
LinkDB
Position
Unknown
AA seq 134 aa
MTLRHRPAYEEEDASALRLGPEFNNAGCLLISEVRYLLEHRPSEKAAPDTAVYNKTLEYV
KTFAKFDKPEAAAAIRETLRRESALTQFEIAQIANLCPVTAEEAKSIVPSLVKIDDDKLQ
PLLDEIQTMRKFQS
NT seq 405 nt   +upstreamnt  +downstreamnt
atgactctccgccaccgtcccgcgtacgaggaggaggatgcctcggctttgaggctcggt
cctgagttcaacaacgctggttgtctactcatctccgaggtccgctatcttcttgaacac
aggccatccgagaaggctgctccggatactgctgtgtacaacaagacgctcgagtacgtg
aagactttcgcgaagttcgacaagccggaggctgcggcagctattcgagagacgctacgg
cgggaatctgcactgacccagttcgagattgcccagatagccaacctatgtcccgtgact
gccgaggaggcaaagagcatcgttccaagtctcgtcaagattgacgacgacaagcttcag
cctctccttgatgagatccagacgatgcggaagttccagtcataa

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