Dichomitus squalens: DICSQDRAFT_45568
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Entry
DICSQDRAFT_45568 CDS
T03133
Name
(RefSeq) U3 snoRNP-associated protein Rrp5
KO
K14792
rRNA biogenesis protein RRP5
Organism
dsq
Dichomitus squalens
Brite
KEGG Orthology (KO) [BR:
dsq00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
dsq03009
]
DICSQDRAFT_45568
Ribosome biogenesis [BR:
dsq03009
]
Eukaryotic type
90S particles
Other 90S particles
DICSQDRAFT_45568
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
S1
S1_RRP5
OB_RRP5_4th
Spt6_S1
HAT_PRP39_N
HAT_Syf1_CNRKL1_C
Suf
HAT_Syf1_CNRKL1_N
HAT_PRP39_C
TPR_19
RNase_II_C_S1
UTP6_C
NRDE-2
TPR_12
ARM_TT21_N
TPR_21
DUF2110
RPN7
CDC45
ARM_TT21_C
Motif
Other DBs
NCBI-GeneID:
18841925
NCBI-ProteinID:
XP_007359769
JGI:
45568
LinkDB
All DBs
Position
Unknown
AA seq
1492 aa
AA seq
DB search
MAAGKKRVLDEASGTPKAKKTKTEEQSKKSKDKAEKPTQPVSFLVSDDIDFPRGGGTTLT
PLEVKTLRAEAAKEVDKELFAATTEKSVKRKRKSEARGSSNSAAKDGKEKAGIRIEHLNY
KTLHLTRLQRVVVGMKILGQVVAVEPLALIVSLPNQLFAHVPITHISTQLTHTLESMEDV
EMGNSDDEDEDSSPSGVPDLFEIFRPGQYVRAVVTAVHPPGTTDVSGLGRARDEVQKASR
RVELNLVPEKVNEGVVKSDLRTGFTMSAAVKSIEDHGYILDLGMSDVSGFLSFKDAQKGS
WGTEKKLHIGQLLDVAVVKMSGNGRTCNVSVDPKTISTASITEVSNVSSIVPGALVQSLV
TAVQSDGLVLQVLGYFDGTIDQFHLVPGQPEVHYQVGQKVKARILYDINPSTPPRFALSL
ADHVVRFTTKSPSADAATTDLRNAYPIGTILEAVKVARVESERGLVVNVGSGIEGFIHIS
QTSDEHVPTLSASSGAWKLGMVHRARVTGYYPLDGILQLSLRASVLGQKFLQVADVQVGE
VIKGTVKKLTDSALFVSISGNVDGVIWPNHYADIALKHPQKRFKPGSSLKCRVLVVDPER
KRVALTAKKTLVESTLPTITQFSDAQVGVLTHAVVFKVSDKSLQVELYNNLKATVPAREA
SETTVPSLSSAFPIGKPVQVRITAVDPETSRITASIRQASPNYKSAITDISGVDIGDIVE
GVISDVRKDKAVVALQPTQVTALLSLNNLANRREVSVAQLRSTLKTGDKLQDLVVTSRNP
EKGFVLVAMKPKEKEQLVQKNQLSIDTVQPGQLVGGRVLRHARHGALVKITKAISGILHP
TDACDDYENGKPFPPVDSVLKAVVISIDKERRQLSLTTRMSRLFPGQDKPIVDREITNIS
DLKVGETIRGFIKSVAEHGLFVTLGRDIDARVQIRELFDDYVKDWKSRFSANQLVKGRVL
SVNIEKKQVELSFRSGDLKRDNQPQLTLSDLSEGQKVDGRVKKVEDYGIFIAIEGSKLSG
LCHKSELSDNKDADVTLALRSFREGDKVKAVILSIDQEKRRISFGLKPSYFEERDFEQDE
SEDEEERESRSSSALGVVEDDDDDDDDDDDGGVGEDEEEDDEDDEADEADEADDEAGRMD
VDLTLDLQKPSGSSSAPSTSGPKESLRLNGGFQWAAPGPSEDVEMGSDQDSDEDVQQEGK
KKKKKRKEIEQDLTADMHTRAPESNSDFERLLLGSPNSSYLWVRYIAFQLQISEIDKARE
IAKRALKTINFREEQEKLNVWIALLNLENVYGTEESLEATFKDAARHNDSKTIHLRMAEI
FEQSDKLEKAEEQYKKTCKKFSQSSKVWSLFGEHYLKRGMLEEARKLLPRSLQSLEKRKH
LKTICKFAQLEYKLGDPERGKTIFEGIVDSHPRRWDMWSIYMDMEAGQGDINSLRNLFNR
VLTLKMTSHKAKSFFKKWLELERRLGDEEGAHAVKTKAIEWTQRAAGTSGES
NT seq
4479 nt
NT seq
+upstream
nt +downstream
nt
atggccgctggaaagaagcgcgtcttagacgaagcgtcgggcactcccaaggccaagaaa
acgaagacagaggagcaaagcaagaaatcaaaggataaggccgagaagccgactcagcca
gtctctttcctcgtgtcagacgacattgacttccctcgaggcggaggcaccactttaact
cccttagaggtgaagaccctccgtgctgaggctgcaaaggaagtggacaaggaattgttt
gcggctacaacagagaagtctgtcaaacgcaagagaaagtcagaggcgaggggttcctcc
aatagtgctgcaaaagatggcaaggaaaaagcagggatccgtatagagcatctcaactac
aaaactttacatttgacacgattgcagcgcgttgtagtaggaatgaagatcctaggtcaa
gtcgtagccgtggaacctctcgctctgatcgtatctctgccgaaccaactcttcgctcac
gtccccatcacacatatttcgactcagcttacacataccctggagagcatggaggacgtg
gagatgggtaattctgacgacgaggacgaggactcatcgccatctggcgtaccagacctc
ttcgagatcttccgacccggccagtacgtccgtgccgtagtcaccgcagtccacccgcct
ggaacgacggacgtatccggtctgggccgcgcgcgcgatgaggtgcagaaggcgagcaga
agggtggagttgaatttggtcccagagaaagtgaacgagggtgtggtgaagagcgacctc
cgaacgggttttactatgtccgccgctgtgaagagcatcgaggaccacggctacatactt
gaccttggcatgtctgatgtgtctggattcttgtcgttcaaggacgcgcagaaaggatca
tggggtacagagaagaagttgcacattggccaactgctggacgttgccgtagtcaagatg
tccggtaatggacgaacttgcaatgtgtccgtggatccgaagaccatatcgactgcgtct
attacggaggtcagcaatgtctcgtcaatcgtccctggtgcccttgtccagtctctggtc
acggcagtgcaatccgatggcctcgttctgcaagtactgggctactttgacggaacgata
gaccagtttcaccttgtacccggtcagcccgaagtgcattaccaagtagggcagaaggtc
aaggccagaatcctctacgacatcaacccctctacgcctccgcgctttgcactttcctta
gccgatcatgtcgttaggttcactacgaagtcacctagcgctgatgctgctacgaccgac
ttgaggaacgcatacccgattggcaccatccttgaagctgtgaaggtggctagggtggaa
agcgagcgaggtcttgttgtgaacgtgggctctggcatcgagggtttcatccacatatca
caaacatcagacgagcatgttcctactctctcggcatcgtctggtgcgtggaagctcgga
atggttcatcgggctcgcgtgacgggttactaccctttggatggcatcctccagctttcc
ctacgagcgtccgtactaggacagaagttcctgcaggttgcggatgtacaagtcggggag
gtcatcaaggggacggtcaagaagctcaccgactctgcgctcttcgtttcgatctccggt
aacgtcgacggcgtgatctggcccaaccactacgcagatatcgcacttaagcatccccaa
aagcgcttcaaacctggtagtagtctcaagtgtagagtccttgttgttgatcccgagcgc
aagcgcgtcgccttgactgcgaagaagacgttggtcgagtccacactacctaccattacc
caattcagtgatgcgcaagttggggtcttaacacatgcggttgtgttcaaggtgtcagac
aagagcttgcaggtagagttgtataataacctgaaggcgaccgtaccagcgcgtgaggca
agcgaaaccactgttccatcgctctcgtctgcattcccaattggcaagcccgtacaggtc
cgtatcactgccgtagacccagagacctctcgcatcacagctagcatccggcaagcatcg
cccaactataagtcggccattaccgacatcagtggagtggacatcggcgacatcgtcgaa
ggagtcatctccgacgtccgcaaggataaggccgtcgtcgctctgcagcctacacaggtc
accgcactgttgtctctgaacaatctcgccaaccgtcgtgaagtgtctgttgcccagctg
cggtcgacactgaaaacgggcgataagcttcaggacctggtcgtaacttcgcggaatccg
gagaaaggcttcgtcttggttgcgatgaagcccaaggagaaggaacagctcgtacagaag
aatcagctgtccatcgacactgtacagcccggccagcttgtcggtggacgtgtcctgcgt
cacgcccgccatggcgcgctcgtcaagatcaccaaagcgatttctggtatccttcacccc
actgatgcgtgcgacgactatgagaacgggaagcccttccctcccgtggactcggtcctc
aaggcggttgtgatctcaatcgacaaggaaaggcgacagctctccttgactacgcggatg
tctcgcctcttccctggccaggacaagcccatcgtcgaccgtgagatcacaaatatcagt
gatctcaaggtgggcgagacaatccgcggcttcatcaagagcgtcgcggagcatggcctc
tttgtcactttgggtcgggacatcgacgctcgtgtacagatcagggagctgttcgatgac
tatgtcaaggactggaagagccgcttctcagcgaatcagctggtcaaaggccgagtcctg
agtgtcaacatcgagaagaagcaggtcgagctctctttccgctccggagatctcaagcgc
gacaatcaacctcaactcacattgtcggacctcagcgagggtcagaaggtcgacggtcgt
gtgaagaaggtcgaggactatggcatcttcatcgccatcgagggctcgaagctcagtgga
ctatgccacaaatccgaactctccgacaacaaggatgctgatgttacgctcgcccttcgc
agcttccgcgaaggggacaaggtcaaggccgtcatcctctccatcgaccaagagaagcgt
cgcatatcgttcggtctcaagccgtcctacttcgaggaaagggattttgagcaagacgag
tctgaggacgaagaggaaagagagtctcggtcgtcctccgctctcggcgtcgtcgaggat
gacgatgacgatgacgatgacgatgacgatgggggcgtgggcgaggacgaggaagaggac
gacgaggacgacgaggcagacgaggcagacgaggcagacgacgaagccggaaggatggat
gtcgaccttactctcgacctgcagaagccttcaggaagctcctcggccccttcaacgagc
gggccaaaggaatctctccgcctcaatggcggattccagtgggccgctcctggtccttct
gaggatgtcgagatgggctccgaccaggatagcgacgaggacgtccagcaggaagggaag
aagaaaaagaagaagcgcaaggagatcgagcaggacttgaccgcggacatgcacaccagg
gctcccgagtccaactccgatttcgagcgtttgcttcttggctctccgaactcatcctac
ctttgggtccggtacatcgcgttccaattgcagatctcggagattgacaaggcgcgtgag
atcgcaaagcgtgcgctgaaaacgatcaacttccgcgaggagcaggagaagttgaacgtc
tggatcgcgctgctgaacttggagaatgtctacgggacggaggagtcgctcgaagcaaca
ttcaaagatgccgcccgtcacaacgactccaagacaatccacctccgtatggcggagatt
ttcgagcagagcgacaagctggaaaaagccgaggagcagtacaagaagacctgcaagaag
ttctcccagagctcgaaggtttggtcactctttggagagcactacctcaagcgtggtatg
cttgaggaagcgcggaagctcctccctcgcagcctccagagtttagagaagcgtaaacac
ctgaagactatctgtaaatttgcacagctggagtacaagcttggtgacccggagcgaggg
aagaccatcttcgagggcattgtcgactcgcaccccaggcgatgggatatgtggtcaata
tacatggatatggaggctggccagggagatatcaatagtctcaggaacctctttaaccgc
gtcttgacccttaaaatgacaagtcacaaagcgaagtcattcttcaagaagtggcttgaa
cttgaacgtcgactcggcgacgaggaaggagcccacgcggtcaagacaaaagcgatcgaa
tggacacaacgtgcggccggtacttccggagagtcgtag
DBGET
integrated database retrieval system
