KEGG   Dichomitus squalens: DICSQDRAFT_53653
Entry
DICSQDRAFT_53653  CDS       T03133                                 
Name
(RefSeq) small nuclear ribonucleo protein
  KO
K12828  splicing factor 3B subunit 1
Organism
dsq  Dichomitus squalens
Pathway
dsq03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:dsq00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    DICSQDRAFT_53653
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03041 Spliceosome [BR:dsq03041]
    DICSQDRAFT_53653
   03036 Chromosome and associated proteins [BR:dsq03036]
    DICSQDRAFT_53653
Spliceosome [BR:dsq03041]
 Complex A
  U2 snRNP components
   U2 snRNP specific factors
    DICSQDRAFT_53653
 Complex B
    DICSQDRAFT_53653
 Complex C
   U2 SnRNP specific factors
    DICSQDRAFT_53653
Chromosome and associated proteins [BR:dsq03036]
 Eukaryotic type
  Chromatin remodeling factors
   B-WICH complex
    DICSQDRAFT_53653
SSDB
Motif
Pfam: SF3b1 PPP2R1A-like_HEAT TOR1L1_N HEAT_EZ HEAT_EF3_N HEAT_ECM29 HEAT HEAT_2 XMAP215_CLASP_TOG Vac14_Fab1_bd Adaptin_N Cnd1 Htt_N-HEAT_1 UME DUF3110 Condensin2nSMC IFRD
Other DBs
NCBI-GeneID: 18842474
NCBI-ProteinID: XP_007363086
JGI: 53653
LinkDB
Position
Unknown
AA seq 1144 aa
MSEPRLVDSYTAPKEVLQEFAEMAEEEDIDPFAETAKQRQIAARQSDYHNRRFNRQAHDS
ADAFKAVVEGEDVEGGYKDAMRLQRLEKEEERVRRAIEEKERQEREEGQQKMDLDKTPPR
AEIEEAQNELAAMQGTKRKRRWDIAEPESEKENKEVKGEWSQEALEGAAPKKRRSRWDAT
PADVAAETPSGKRSRWDQAPAAAPEVPMTPIIMNAPGLMHEDKHNRYLTDEELDAILPSA
GYAIVTPPPGYAPLIRPPKLSGPSVTEVGGFQIQESSDAAAAAAAAGLAPELPTEIPGVG
NLAFFKPEDAQYFAKILKEEDETELSVDEMKERKIMRLLLKIKNGTPPVRKTALRQITDK
ARDFGAGPLFDKILPLLMERTLEDQERHLLVKVIDRVLYKLDDLVRPYVHKILVVIEPLL
IDEDYYARVEGREIISNLSKAAGLAHMISTMRPDIDHADEYVRNTTARAFSVVASALGIP
SLLPFLKAVCRSKKSWQARHTGIRIVQQIAIMMGCAVLPHLRNLVECIAHGLQDEQTKVR
TMTALALAALAEASAPYGIESFDNVLKPLWVGIRLHRGKSLAAFLKAIGFILPLMDPEYV
SYYIKEVTIILIREFQTSDEEMKKIVLKVVQQCAATEGVTAQYIKQDILPDFFKAFWVRR
MALDRRNYRQVVETTVELAQKAGVAEIVGRIVNELKDEAEPYRKMVMETITKVVASLGAS
DIDERLEVRLVDGIIYAFQEQTTEDQVMLDGFGTVVNALGIRVKPYLTQIVSTILWRLNN
KSAKVRQQAADLTTRLAVVIKQCGEDQLLSKLGLVLFEQLGEEYPDTLGSIIAAEGAIAN
VVGMTQMNPPVKDLLPRMTPILRNRHEKVQEATINLIGRIADRGAEFVPAREWMRICFEL
LDLLKAHKKGIRRAAVNSFGYIAKSLGPQDVLQVLLTNLRVQERQSRVCSTVAIAIVAET
CGPFTCIPAILNEYRTAELNVRTGCLKALSFVFEYVGPQSAYYADSVVTMLEDALTDRDL
VHRQTASTIVKHLALGVAGLGCEDSMLHLMNLVWPNCFETSPHVIGAVMEAIEAMRVTLG
PGVLLSYVLQGLFHPARKVREVYWRIYNSLYLGAEDALVPFYPDLGELSEGQNVYDRQPL
QMFI
NT seq 3435 nt   +upstreamnt  +downstreamnt
atgtccgaacctagactcgtcgattcctacacggcgccgaaggaggtgctgcaggagttc
gcagagatggccgaggaagaggacatcgaccccttcgcagagacggcgaagcagcggcag
atcgcagcgcgccagtccgactaccacaatcgtcggttcaaccgccaggcgcacgatagt
gccgacgctttcaaggccgtggtcgaaggagaggacgtcgagggaggctacaaggatgcg
atgaggctgcaacgcctggagaaggaggaggagcgggtgcggagggcgatcgaggagaag
gagagacaggagcgggaggaggggcagcagaagatggacctcgacaagacaccgccgcgc
gcggagattgaggaggcgcagaatgagcttgccgctatgcagggcacgaagcgcaagcgg
cgctgggacatcgcagagcccgagtcagagaaggagaacaaggaggtcaagggtgagtgg
tcccaagaggctctcgagggcgctgcgccgaagaagcggcgttctagatgggacgcgact
cccgccgacgtcgcagcggagactccgagtgggaagaggtcgcgctgggaccaagccccg
gccgctgctccggaggtcccgatgacgccaatcatcatgaacgccccgggtctcatgcac
gaggacaagcacaaccggtacctcacggacgaggagctcgacgctatccttccctctgct
ggctatgctatcgtcaccccccctcctggctacgctcccctcatccggccgccgaagctc
tctggtccctccgtcaccgaggtcgggggtttccaaatacaagagagctcggatgcagca
gccgcagccgcagctgctggtcttgcgcctgaacttcccaccgaaatccctggtgtcggt
aacttggccttcttcaagcctgaagatgcgcagtattttgcgaagatcctcaaggaggag
gacgagacggagctatcggtagacgagatgaaggagcgcaaaatcatgcgcttgcttctg
aaaatcaagaacggtacgcctcccgtccgtaagaccgcccttcgtcagatcaccgacaag
gctcgtgacttcggcgctggtcctctcttcgacaagatcctccctcttctcatggagcgt
accctcgaggatcaggaacggcacctgctcgtcaaggtcattgaccgtgtcctttacaag
ctggacgacctcgttcgcccgtacgtgcacaagatcctagtcgtcatcgagccattgctc
atcgacgaggattactatgctcgtgtcgaaggtcgtgagatcatctccaacctgtcgaaa
gctgccggtctagcgcacatgatctccaccatgcgtcctgatatcgaccacgccgacgag
tatgtccgcaacaccaccgcacgcgcgttctccgttgtcgcatcggctctcggtattcct
tccctgctccccttcctgaaggcggtctgtcgcagtaagaagtcatggcaggctcgtcat
accggtatccgtattgtgcagcaaatcgccatcatgatgggttgcgccgtcctgcctcac
ttgcgcaacctcgttgagtgcattgctcacggtcttcaggacgaacaaacaaaggttcgg
acgatgactgccctggccctggctgccttggcggaggcctctgcgccgtacggtatcgaa
tcttttgataacgtcctcaagccgctctgggtcggtatccgtctccaccgtggcaagtct
ctcgcagcgttcctgaaagccatcggtttcatcctcccgctcatggacccggagtacgtc
tcgtactatatcaaggaagtcaccatcatcctcatccgcgagttccaaacgtcggacgag
gagatgaagaagatcgtcctgaaggtcgtgcagcagtgtgcggcgaccgagggcgtcacg
gcccagtacatcaaacaggacatcttacccgacttcttcaaggcgttctgggtccgccgc
atggccctcgaccggaggaattaccgtcaggttgtcgagaccaccgtcgagcttgcgcag
aaggcgggtgtggcggagatcgtggggaggatcgtcaacgagctcaaggacgaggcggag
ccgtaccgcaagatggttatggagaccatcaccaaggttgtcgcgtccctcggtgcctcg
gacatcgacgaacgtctggaagttcgtctggtcgatggtatcatctacgcgttccaggag
cagacaacggaggatcaggtcatgttggacgggttcggcaccgtcgtcaacgcactcggc
atccgagtcaagccatacctgactcaaattgtctcgaccattctctggcgtttgaacaac
aagagcgccaaggtccgtcagcaggccgccgacctcaccacccgtctcgccgtcgtcatc
aagcaatgtggcgaagatcagttgctgagcaagctcggcctcgtcctgttcgagcagctc
ggtgaggagtatccggatacgctcggcagtatcattgctgccgagggcgcgattgcaaac
gtcgtcggtatgacgcaaatgaacccgcccgtaaaggatctcttgccccgtatgacgccc
atcctgcgcaaccgtcacgagaaggtgcaggaagccaccatcaacctgattggtcgtatc
gcagatcgtggcgcggagtttgtccccgcccgggagtggatgcgaatctgcttcgagttg
ctcgaccttctcaaggcgcacaagaagggtatccgtcgtgcggccgtcaactcttttggc
tatatcgcgaagagtttgggtccccaggatgtccttcaggtgctgctgacgaacctgcgc
gtgcaagagcgtcaatcgcgtgtctgcagtaccgtcgctatcgccatcgtcgcggagact
tgcggtcctttcacctgcattcctgccattctcaacgagtatcgtactgcggagctcaac
gtccgtacgggttgtttgaaggccctgtccttcgttttcgaatacgtcggaccgcagtcg
gcgtactacgccgactccgtcgtcacaatgctcgaggacgccctcaccgaccgcgatctc
gttcaccgacagactgcgagtactatcgtcaagcatttggccctcggtgtcgctggactt
ggctgcgaagactcgatgcttcacctcatgaacctagtctggccgaactgtttcgagacg
tccccgcacgtcatcggcgcggttatggaagccatcgaggcgatgcgcgtcaccctcggc
ccaggcgttctcctcagctacgtcctccagggcttgtttcaccctgcgaggaaggtccgg
gaggtgtattggaggatatataactcgctctacctcggtgcagaggacgcgctcgtgccg
ttctaccccgacctcggtgagctgagcgaggggcaaaatgtatatgaccgtcagcctctg
cagatgttcatatga

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