Dichomitus squalens: DICSQDRAFT_68609
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Entry
DICSQDRAFT_68609 CDS
T03133
Name
(RefSeq) TPR-like protein
KO
K12600
superkiller protein 3
Organism
dsq
Dichomitus squalens
Pathway
dsq03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
dsq00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
DICSQDRAFT_68609
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
dsq03019
]
DICSQDRAFT_68609
Messenger RNA biogenesis [BR:
dsq03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Ski complex
DICSQDRAFT_68609
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
TPR_16
TPR_CcmH_CycH
TPR_1
TPR_19
TPR_2
TPR_8
TPR_14
TPR_11
TPR_17
TPR_12
TPR_6
TPR_7
TPR_22
ANAPC3
TPR_9
PknG_TPR
TPR_20
TPR_Slam
DUF7557
TPR_10
TOM20_plant
ARM_TT21_5th
RPN6_N
DUF6244
Alkyl_sulf_dimr
Motif
Other DBs
NCBI-GeneID:
18843589
NCBI-ProteinID:
XP_007369482
JGI:
68609
UniProt:
R7SNT0
LinkDB
All DBs
Position
Unknown
AA seq
1426 aa
AA seq
DB search
MSEIVKTKLKNAREAIRKKEFEKARDAALGALEYEEDNYFANVFLGLAYRELKDYEQSEQ
SFRKAIASDEQQLHAWQGIRDLYEETKNHSEYLKSLYKLAELYAAGKDAVKCAEIIQKII
DIRRDPSRSSPVELAEALALLLPESLFCPVLSSLSPPDPTNPSTATFVVQSAIHNSLPIL
EELVSIYEQDETTWQESEITKRRQRLDAPSPQEVQRAVTLELMARSKLPALYNEVLNHPN
TSDELRRNTEEKLLEKKQQYLFALPAAGNENKAHLASELDELINGIVLLKIPNELAWSLL
LESKDAAQIEDYDFNLLKQFIGLFPRSPLAKLLQAYFEHIGIPLMEDAEKDGPAPSPDEE
PDYIEIMMEVFSSLNGSILAHRIIAELYEQDTDYENAIKVSESGLELVRRVEQNWGRPLK
QTKKAFNVILATSLVHYFPPKHHPRALKLVDEVLAEEPDNLRALLARGFILEHAQKWTNS
ADIFAKVAKLDPEGFDYGLQAKEEHAWSEAMCGKLQVAADELRDVIAVLDQLEGRDEDKA
RAWWRLGRCFWEMGVEHREEAYKHFVTALKRSSTFAPAFTSLGIYYSEFLEPPDPNRASK
CFQKAFELDPRESDAARRLAEGFAEEGEWDLVEVVARRTIEGEGGLEQDPEAKASRRYLP
LNAWAWKAVGAVELTRRNYVSAIEALQIALRTDVDDHMSWLRLGEAYSKAGRYAAALKAL
ERARELNTEDWVVSYFTGDVQRQMGTYDEAIKAFRSILEGRPQELGVLHSLGQTYLELGR
FELSTSFLARAETSFVSAIRVTLELLDASSGLRRVAWKTVADSLYQLSTFSAFSDEDAVK
DVVATIVSLVTAYHGKGPVDGLSQSVSIDDIADAPVYALQVASAAYEYRLSLGAIDDAAM
ASEHYDLGVAMSAFARHTPDSEKREKAQQDAIAHFKNALRLEPGNDAFWVALGNATFLSQ
TALCQHSYVRALEIDGKNAATWTNLGMLYLHYEDVELANEAFYKAQTLDPDYALAWVGQG
LVATANRHDREARALFEHATGLTAVVPEADLEYATRLFSKVNATSKSRSASSEALLPAFF
VLDRYCKQRPKDASALHLFGLVCERIGHIELGIEMISRAISVLEAAYEQSEDPVIERQFT
IAHANVARLRMAKEDHEGALESYQVATGLLPEQKEGDDADTKALLAQCQFGSGLANFKLG
QLPEALTLFEFAMTTAADLPLIRGHVVVLLAQTLWAIGTGEARESAKNQLLQSIEYDPEN
LLAINTLAGMGILTDDDGLVDAALSELLSLPLDQRHERDPEREVTYLLVQHHLGQGDAMQ
AISVAQKAVFAEPERTDVRRALASLALRGGQSATALAILGGSAQTEASFAEQRASLALHA
ASLCLDRGNKDRAAEALRLAQKGIMLSPWNQRGWETLAYVQSRLSQ
NT seq
4281 nt
NT seq
+upstream
nt +downstream
nt
atgtccgagattgtgaagacgaaactcaagaatgccagagaggctattcgtaagaaggag
tttgaaaaggcgcgtgatgctgccttaggagcactcgaatacgaagaggataattacttc
gcgaacgtctttctcggcttggcgtacagggaattgaaagactatgagcaaagcgagcaa
tcatttcgtaaagccatagcctccgatgagcagcaactccacgcttggcagggtatccga
gatttgtatgaagagacgaagaaccattcggagtatctgaagtcattatataagttggca
gaactatacgcggccggcaaggacgctgtcaaatgcgccgaaatcatccagaagatcatt
gacattcgacgcgaccctagcaggagctctcctgtagagcttgcagaggctctcgccctc
ttactccccgagtcattattttgccctgtcttatcttcgctatctccgccagacccaaca
aacccctctacggctactttcgtcgtgcagtcggccatacacaactccttgcccattcta
gaagaactcgtgtcaatctatgagcaggatgaaacgacttggcaagagagcgagatcacc
aagcgcagacagagactcgatgcgccttcgccccaggaggttcagcgagctgtgaccctg
gaacttatggcgcgctccaagctaccagccctctacaacgaggtgctgaaccatcctaac
acctcggacgagctgcgcaggaacacggaagagaaattgctcgagaaaaagcagcaatac
ttgttcgctctccccgctgccgggaatgaaaataaggcacatctagcctctgagttggac
gaactgatcaacggcatcgtactgttgaagattccgaatgagctcgcgtggtctcttctg
ctggaaagtaaagacgcagcgcagatcgaggattatgacttcaacctgctaaagcagttc
attgggctgttcccgagatcgcccttggcgaagttgctgcaggcgtactttgaacacata
ggcatacccttgatggaagatgcggaaaaggacgggcctgctccatcgcctgatgaagag
cctgattatattgagatcatgatggaggtgttctctagcttgaacggctctatacttgca
cacaggattatcgccgagctgtacgaacaagacactgattatgagaacgccatcaaggtt
tcagagagtggactcgagctcgtccgtcgcgtcgagcagaactggggacgaccgcttaag
caaacaaagaaagcgttcaacgtcatcctcgcgacgtcattggtccactacttcccgccc
aagcaccacccacgcgctctcaagctcgtcgacgaggtacttgccgaggaaccggacaac
ttacgggccctcctggcccgtggtttcatcctcgagcatgcacagaagtggactaattca
gccgatatctttgcaaaagtggccaagctggaccctgaaggcttcgattacggcctgcag
gcaaaggaagagcacgcctggtcagaagccatgtgcggcaaactgcaagttgccgctgac
gagctgagggatgtcatcgccgtcttggatcagctggaaggcagggatgaggacaaggcg
cgggcgtggtggagattggggcgatgcttttgggagatgggcgtggaacaccgtgaagaa
gcctacaagcatttcgtcaccgccctgaagcgctcctcgacgttcgcccctgcgtttact
tccctaggcatctactattcggagttcctcgaaccccctgaccccaaccgtgcatcgaag
tgtttccagaaggccttcgagcttgacccgagggaatcggacgctgcgcgccggctcgcg
gaagggttcgcagaggagggggagtgggaccttgtcgaggtcgtcgcgcgccgcaccatc
gaaggcgaaggcggcttggaacaagatccagaagcaaaggcctctcgccggtacctgcca
ctcaatgcatgggcgtggaaggccgtgggtgccgtcgaactgactcggcgcaactacgtt
tctgccatcgaggcgctacagatcgcgctccggactgacgtggatgatcacatgtcctgg
ctccggctgggggaggcgtacagcaaagcgggacgatacgcagccgcgctcaaggccctc
gagcgcgcgcgcgaactgaacacggaggattgggttgtgtcgtacttcactggagacgtg
cagcggcagatgggcacgtacgatgaggccatcaaggcgttccggtctattttggagggc
cgcccgcaggagcttggagttcttcattcactggggcagacttacctggagctgggacgt
tttgagctctccactagtttcctcgccagggcagagacgtcattcgtctctgcgatccgt
gttaccctcgagctactcgatgccagctccggactccgccgggtcgcatggaagacagtc
gccgactctctataccagctgtcaaccttctccgcgttctctgacgaagatgccgtcaag
gatgtggttgcaaccattgtctcactcgtcactgcatatcatggcaaaggccccgtcgat
gggctttctcagtcggtctccattgacgacatagccgatgcacccgtgtatgcgcttcag
gtcgcttctgcagcatacgagtacaggctgtctctaggtgcaatcgacgatgctgccatg
gcttccgagcactatgatcttggcgtcgcaatgtctgcgttcgcgagacacaccccggac
agcgagaaacgagagaaagctcagcaagatgctatcgctcatttcaagaacgctctccgc
ctcgagcccgggaacgacgccttctgggtcgctctcggaaatgcgacgttcttgtcccag
actgcgctttgccagcactcgtacgtccgtgcgttggagatagacgggaagaatgccgcg
acatggaccaatctcggcatgttgtatctccactacgaggacgtcgagttagcaaacgaa
gcgttctacaaggcgcaaacgcttgatcccgactacgctctggcgtgggtcggacagggt
ctcgttgcgactgcgaaccggcacgacagggaagcaagggcactcttcgagcatgccacg
ggtctgacggcagttgtgcccgaagcggacctggaatatgccacgcgtctcttcagcaag
gtgaacgcgacatcaaaatcccgctcagcctcgtccgaagcgcttcttccagcattcttt
gtcctcgatcgctattgcaagcagagacccaaggatgcatctgcgttgcatctatttgga
cttgtctgcgagcgcatcgggcatatcgagcttggaatagagatgatatcacgggcaata
tccgttctcgaagcagcctacgagcagtcagaggacccggttattgagcgacagttcacc
atcgctcacgctaacgtcgcccgcttgcggatggccaaagaagaccacgagggtgccctt
gagtcgtatcaggtcgcaacaggtctactgcccgaacagaaagaaggagatgacgctgac
acaaaggcactcctggcgcagtgccagttcggctctggcctggctaacttcaagcttgga
cagctaccagaggcattgacgctcttcgagtttgcaatgacgacggccgcggatctcccg
ctgattcggggacacgtcgtcgtgctgctcgcgcaaacgctatgggcgatcggcacaggc
gaggcgagggagtcggcgaagaaccagttgctgcagagcattgaatatgaccccgagaat
ctgttggcgatcaacaccctagccggcatgggcatcctcacagacgatgacggcctcgtc
gatgcggcgctgtccgaattgctgtccctccctctcgatcagcgccacgaacgcgacccc
gagcgcgaagtcacatacctcctcgttcaacatcatctcggtcaaggcgacgcgatgcaa
gcaatatctgtagcgcagaaagctgtgttcgcagagcccgaaaggaccgacgtgcggcgc
gcgctcgcctccctcgcgttgcgcgggggtcagagcgcgacggcgctggctatcctaggt
ggctcggcgcagaccgaagcaagcttcgcggagcagcgtgcctcgctggcgctccacgcg
gcgtctctctgcctggatcgcggaaacaaggaccgcgcggcagaggcgttgcgacttgca
cagaaagggatcatgctttccccatggaaccagcgcggctgggagacgttggcatacgtc
caaagccgtctttcgcagtga
DBGET
integrated database retrieval system
