Dichomitus squalens: DICSQDRAFT_73309
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Entry
DICSQDRAFT_73309 CDS
T03133
Name
(RefSeq) P-loop containing nucleoside triphosphate hydrolase protein
KO
K12815
pre-mRNA-splicing factor ATP-dependent RNA helicase DHX38/PRP16 [EC:
5.6.2.6
]
Organism
dsq
Dichomitus squalens
Pathway
dsq03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
dsq00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
DICSQDRAFT_73309
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
dsq03041
]
DICSQDRAFT_73309
Enzymes [BR:
dsq01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
DICSQDRAFT_73309
Spliceosome [BR:
dsq03041
]
Complex C
Other components
Step II factors
DICSQDRAFT_73309
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
OB_NTP_bind
HA2_C
HA2_N
DEAD
AAA_22
Helicase_C
nSTAND3
AAA_19
SLFN-g3_helicase
ATPase
AAA_30
T2SSE
ABC_tran
SRP54
AAA_16
PhoH
AAA_24
Motif
Other DBs
NCBI-GeneID:
18843944
NCBI-ProteinID:
XP_007371639
JGI:
73309
UniProt:
R7SHI3
LinkDB
All DBs
Position
Unknown
AA seq
1206 aa
AA seq
DB search
MASPTKGDDEFIHHIAIQLSRVMNLINPNDLLARRVQDIAKNNTVDGFIEAAKSFGKFKP
SFLAELHAEILSHEKQQATGQPQLPVQGIVVHDSDVLEPEPVRQGGLMRKDAKHAFRQPA
KPLDPPTPRASVLGLDKLAQEKRALAAQANGEGSRKRPKLDGDGDEPVFKVPSLPASRTS
HMRQRGEETPSHPGGLSEVARQRLEERRKIRGRPGITAKNEPRGDGPRGLGDFQRRLNRD
QAYDRRRGGDRDRREWDATPRSERSRRGEDAPSVRIPNASWDATPRRPSSPGGSSARNKR
WDAPTPRRGGSPGSDGEGGLGIDAREWEEEQTRLDRDWYMGAEEGGVVGDEDYNPLAQYD
DLAAAKEEQMAKKQVKKISARQAQYNADNDLWEANRMVTSGVATRKEIDLDFEDESESTV
HVMVHDLKPPFLDGRTVFTKQLEPINPVRDPTSDMAVFARKGSALVREKREQAERAKAAA
KLAALGGTQLGNIMGVKDEEMEAEAAAEQKAKQEKEEDYKGDSKFASHLKSSKGVSVFAR
SRTLKEQREYLPAFACREELMKVIRENQVIVVVGETGSGKTTQLAQFLYEDGYCAYGLIG
CTQPRRVAAMSVAKRVSEEMECKLGSTVGYAIRFEDCTSPETKIKYMTDGVLLRESLNEG
DLDRYSVIILDEAHERSLSTDVLMGLLRKILSRRRDLKLIVTSATMNAEKFSNFYGNAPT
FTIPGRTFPVEVFHSKSPCEDYVDSAVKQVLQIHLSLPPGDILVFMTGQEDIEVTCQVVQ
ERLSQLDDPAPLAVLPIYSQMPADLQAKIFEPTPDGRRKVIVATNIAETSLTGTGFCYRL
YTEMAFRNEMFSNNIPEIQRTNLANTVLLLKSLGVKNLLEFDFMDPPPQANMLNSMYQLW
VLGALDNVGDLTPIGRKMSEFPMEPSMAKMLIQSVEYRCSAEMLTIVSMLSVPSVFYRPK
ERMEEADAAREKFNVPESDHLTLLNVFNQWKSHGFRDDWALRHFLHPKLLRKAREVRAQL
EDIMKFQKMELISAGTDFDIIRKAITAGYFHQAARVKGIGEFVNIRTGLPTHLHPTSALY
GLGYTPTYVVYHELILTSKEYMTQVTAVDAYWLAELGSVFYSVKEKNFDERGNRRKADRE
FSKRAELETEMARQREESAKKAQEEALAAKTSSSSSSKIIVPGTPRNSGVGAGARVTATP
RRRVGI
NT seq
3621 nt
NT seq
+upstream
nt +downstream
nt
atggcctccccgactaaaggcgacgatgaattcattcatcacattgccattcagctctca
agagtaatgaatctcatcaatccgaatgatttacttgctcgacgcgtccaggacatagcc
aagaacaacacggtggatggcttcattgaagcggcgaagtcttttggcaagtttaagcct
tccttccttgcagaacttcatgcagagatcttgtcgcacgagaagcagcaggccacagga
caaccgcaactacccgtacaaggaatcgtggtgcacgatagtgatgtccttgaacccgaa
cctgtgcgtcagggtggtctcatgcgcaaggatgcgaaacacgcattccgtcaaccagcg
aagccccttgatccccctaccccgcgtgcatccgtgctcggactcgacaagctcgctcag
gagaagcgcgctcttgcagctcaggcgaacggtgaagggagtcggaagagaccgaaacta
gatggagacggagatgagccggtcttcaaagtcccatctcttcccgcttcacggacctcg
catatgcgccagcgaggcgaagagacaccatctcatcctggtggattgtcggaggtcgca
cgtcagcggctggaggagcgcaggaagatacgaggtaggccgggcataactgcgaagaac
gaacctcgtggagatgggccgcgcggccttggcgacttccagcggcgactgaaccgcgat
caagcatacgatagacggagaggtggagatcgcgaccgccgcgaatgggacgccacacca
cgctcagaacgcagtcgtcgaggggaggatgcgcctagcgttcggattccaaatgcttcc
tgggatgccacgccaaggcggccttcgtcgcccggcggatcttctgcacgcaacaagaga
tgggatgcgccaacgccacgtcgtggtggatcgcctggctccgatggcgagggtgggtta
ggtatagatgcccgagaatgggaggaggagcagacgcgtctggacagagattggtacatg
ggcgcagaagagggcggagttgtgggcgatgaggactataatccgcttgcgcagtacgac
gacctcgcggcggcgaaagaggagcagatggcaaagaagcaggtcaagaagatctcggcg
cgccaagcgcaatataatgccgataacgacctctgggaggccaaccggatggttacctct
ggggtggcgacccgtaaagagattgacctcgacttcgaggatgagtccgagtcgaccgta
cacgtcatggtgcacgacctcaagccacccttcctcgatggccgtaccgtcttcaccaag
cagctcgagcctatcaaccccgtccgcgacccgacgagcgatatggccgtcttcgcccgg
aaggggagcgcccttgtcagggagaaacgcgaacaagccgagcgcgcgaaggccgcagcc
aagcttgctgctcttggcggtacgcagctaggtaacatcatgggcgtgaaagacgaggag
atggaagccgaggctgccgccgaacagaaggcaaaacaggagaaagaggaagactacaag
ggcgactcgaaattcgcttcgcatctgaagagctcaaagggtgttagtgtgttcgctcgc
tcgagaacgcttaaggagcagcgagaatacttgcctgccttcgcttgtcgcgaggaactg
atgaaggtcattcgggagaaccaagtcatcgttgtggtcggtgagacaggatctggcaag
acgacccagctggcgcagttcttgtacgaagacggctactgtgcgtacggtctcattgga
tgtacacaacctcgtcgcgtggctgcgatgtccgtcgccaagcgtgtcagcgaggagatg
gagtgcaagcttggctccactgtcggctatgcaatccgtttcgaggattgcacctctcca
gagacgaagatcaagtacatgacggacggcgtactgctgcgtgaatccctgaacgagggc
gacctagatcgctatagcgtcatcatccttgatgaggcgcacgagcgatcactgagtacc
gacgtgctcatgggtctcctgcggaagatcttgtctaggcggagagatctcaaattaatc
gtcacgtctgctacgatgaacgctgagaagttctccaacttctatggcaatgccccaaca
ttcactatccctggtcgaacgttccccgtcgaggttttccactcgaagtctccatgcgag
gactacgtcgacagcgcggttaagcaggtgctgcaaattcacctatccctcccaccaggg
gatatcctcgtcttcatgactggtcaagaggatattgaggtgacatgccaggtggtccaa
gaacgattgtcgcaacttgacgaccctgcacctcttgccgtattgccgatctactcgcag
atgcctgctgacctccaggcaaagatctttgaaccaaccccggacggtcggcgaaaggta
atcgtcgctacgaatatcgcggagacatccttgactggtaccgggttctgttaccgcctc
tacaccgagatggcgttccggaatgagatgttctctaacaacatcccagagatccagcgg
acgaacttggcgaacacggtactcctgctgaaatctctcggcgtcaagaacctcctcgaa
ttcgacttcatggacccacctccacaggcgaacatgctcaactcgatgtaccagctctgg
gtgcttggtgccctggacaacgtcggcgacctgacacccatcgggcggaagatgagcgag
ttcccgatggaaccgagcatggcgaagatgctcatccagtcggtcgagtacagatgctcc
gccgagatgctcactatcgtgtcaatgctctccgtgccgagcgtcttctaccgaccaaag
gagcgcatggaggaggcggacgcggcccgggagaagttcaacgtacctgagagtgaccac
ctcacactgctgaacgtgttcaaccagtggaagtcacacgggttccgggacgattgggcc
ttgcgtcacttcttacacccgaaactgttgaggaaggcgcgcgaggtccgcgcgcagctg
gaggacatcatgaagttccagaagatggagctcatttctgctgggacagacttcgacatc
atccggaaggcgatcactgctgggtacttccaccaggccgcgcgtgtgaagggcattggg
gagtttgtcaacatccgcacgggtcttcccacacacttgcacccgacaagtgcgctgtat
ggcttaggctacacgccaacatacgtcgtttatcacgagctaattctgacgtccaaggag
tacatgacccaagtcacggccgtcgatgcttactggcttgccgagctcgggtccgtcttc
tactctgtaaaggagaagaacttcgatgagcgtgggaaccgacggaaggccgaccgcgag
ttctccaagagggcagagctcgagacggagatggcgcggcagagagaggagagcgcgaaa
aaggcgcaagaggaggcacttgcggcgaagacgtcgtcgagtagcagctccaaaatcatc
gtccctggaaccccccgtaacagcggtgttggggctggtgcgcgcgtcacggcgacgccc
agacgacgcgtgggtatctga
DBGET
integrated database retrieval system
