KEGG   Dichomitus squalens: DICSQDRAFT_81126
Entry
DICSQDRAFT_81126  CDS       T03133                                 
Name
(RefSeq) U4/U6 snRNP-specific spliceosomal protein
  KO
K12662  U4/U6 small nuclear ribonucleoprotein PRP4
Organism
dsq  Dichomitus squalens
Pathway
dsq03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:dsq00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    DICSQDRAFT_81126
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03041 Spliceosome [BR:dsq03041]
    DICSQDRAFT_81126
Spliceosome [BR:dsq03041]
 Complex B
  U4/U6.U5 tri-snRNP components
   U4/U6 snRNP specific factors
    DICSQDRAFT_81126
SSDB
Motif
Pfam: Beta-prop_WDR5 WD40_Prp19 Beta-prop_THOC3 Beta-prop_WDR3_1st WD40 Beta-prop_WDR3_2nd WD40_CDC20-Fz WD40_WDHD1_1st WD40_Gbeta Beta-prop_EML_2 Beta-prop_CAF1B_HIR1 EIF3I WDR55 Beta-prop_TEP1_2nd Beta-prop_WDR36-Utp21_2nd Beta-prop_WDR90_POC16_2nd WD40_MABP1-WDR62_2nd Beta-prop_WDR75_1st ANAPC4_WD40 WD40_MABP1-WDR62_1st Beta-prop_EML WDR90_beta-prop_4th Beta-prop_WDR41 Beta-prop_DCAF4 PRP4 NBCH_WD40 Beta-prop_WDR36-Utp21_1st Beta-prop_Aladin Beta-prop_TEP1_C Beta-prop_SCAP Beta-prop_IFT122_1st Beta-prop_WDR19_1st Beta-prop_SPT8 Beta-prop_EIPR1 Beta-prop_HPS5 eIF2A RMC1_N WD40_like Beta-prop_DCAF12 WD_LRWD1 Beta-prop_RIG_1st Tricorn_2nd Beta-prop_WDR11_2nd
Other DBs
NCBI-GeneID: 18844380
NCBI-ProteinID: XP_007362928
JGI: 81126
LinkDB
Position
Unknown
AA seq 506 aa
MSELTLDTLIDDGNHLGSERARAENQVILDELERKKKARNLAVPTDDNRVKARLREIGEP
ITLFGERPPDRRDRLIYVLSQINAARGDEAMAVDEESSEESEEEVEEFYTPGSLELLEAR
RFLAEYSLPRAQKRVAQQRLDSKMPLGRIIDIRKKVFAEVKSFANLGSQIGDERPISLVR
FSPNSKYLATGSWAGNVKLWDMPNCTPVRSFRGHTDRVGGVAWHPQATLSQSEDVVNMVS
GAADQTVNLWSLNSETPLATMKGHADRVARVAFHPSGNYVASASFDTTWRLWDVKTSKEL
LLQEGHSKEVFSVEFQNDGALCASGGLDAIGRVWDLRTGRTAMVLDGHVQAIFAIAFSPN
GHQIATGSGDDTIRIWDMRSLKALYTIPAHLSNVSDIRFFYGDELPPGFSSDVTMNGTDD
ASASPDAKPTDAEKVIEEWKYRSGLYFVSGGYDGLVKLWSADDWQLLRTLPTDGGKVMSV
DLSHDGKMLASGTYNRNFQIFTPEGS
NT seq 1521 nt   +upstreamnt  +downstreamnt
atgtccgaactcacgctcgacacactcatagatgatggcaaccacctaggctcagagaga
gcaagggccgaaaaccaggtcatcctcgatgaactcgagcgcaagaagaaggcgcgtaat
ctcgccgttccgaccgacgacaacagagtcaaggccaggctgcgcgagattggggagccc
ataacgctctttggcgaacgacctccagacaggagagaccgtctcatctatgtcctctcc
caaatcaatgcagcgcgtggggacgaggcaatggcagtcgacgaggagtcctcagaggag
agtgaggaagaggtcgaggagttctatactcccggctccctcgaattgctggaggcaagg
agattcctagcggaatactctcttcctagagctcaaaaaagagtcgcgcagcaacgccta
gacagcaagatgccgttgggtcgcattattgatatacggaagaaggtcttcgcagaagtc
aagagcttcgcaaatctgggttcacaaattggcgacgagcgacccatctctctcgtccgt
ttctcgcctaacagcaaatacctcgccaccggaagttgggcaggtaatgtaaagctctgg
gatatgcccaattgtacacctgtccgaagcttccgaggtcataccgaccgtgttggagga
gttgcatggcatcctcaagcgaccctaagccagagtgaagatgtggtcaacatggttagt
ggtgctgcagaccaaactgtcaatctgtggtctttgaacagcgaaacacctctagcgacg
atgaaaggtcatgcagaccgagttgcacgcgttgcgttccacccctcgggcaactacgtc
gcgagtgccagcttcgatacgacttggcgactctgggacgttaagacgtcaaaggagctt
ctcttgcaagaaggtcactcgaaagaagtcttttcagtcgaatttcagaacgacggtgcg
ctttgtgcgtcaggtggattggacgccatcggccgagtatgggatctgcgcacggggcga
accgcaatggtactcgatggacacgtccaagccatcttcgcaatcgctttctcgccaaac
ggccaccaaattgctacggggtccggagacgacaccatccgaatatgggacatgcgctcc
ctcaaggccctctacaccatccctgcccacctttccaacgtctctgacatccgcttcttc
tacggcgacgagcttcctccaggcttctcctccgacgtcaccatgaacggcacagacgac
gcctctgcctccccggacgcgaagcccaccgacgccgagaaggttatcgaggagtggaag
tatcgctctgggctgtacttcgtcagcgggggttacgacgggctcgtgaagctctggagc
gcggatgactggcagctcctgcgcacgctgcccacagacggaggaaaggtcatgtccgtc
gacttgtcgcatgacgggaagatgctcgcgtcggggacgtacaaccgcaatttccagata
ttcactccggaggggtcgtga

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