Dichomitus squalens: DICSQDRAFT_86616
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Entry
DICSQDRAFT_86616 CDS
T03133
Name
(RefSeq) hypothetical protein
KO
K14400
pre-mRNA cleavage complex 2 protein Pcf11
Organism
dsq
Dichomitus squalens
Pathway
dsq03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
dsq00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
DICSQDRAFT_86616
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
dsq03021
]
DICSQDRAFT_86616
03019 Messenger RNA biogenesis [BR:
dsq03019
]
DICSQDRAFT_86616
Transcription machinery [BR:
dsq03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
DICSQDRAFT_86616
Messenger RNA biogenesis [BR:
dsq03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Pre-mRNA cleavage factor IIm (CFIIm)
DICSQDRAFT_86616
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Pcf11_C
CID
zf_PCFS4
Pfc11_Clp1_ID
Zn-C2H2_12
Motif
Other DBs
NCBI-GeneID:
18844666
NCBI-ProteinID:
XP_007366009
JGI:
86616
UniProt:
R7SZQ9
LinkDB
All DBs
Position
Unknown
AA seq
640 aa
AA seq
DB search
MSLYPQTTTYTQMPYPAQGYGAAVPPQPSYYPPPPAPQPVFHLDPNMFRRDYMTRLANLT
VNSRPIIQTLSLIAQDYSRYADVVVQCIEQHIRRVPPWMKLPSFYLLDAISKNVYDPYAR
HFTPIVVRLFLDTYEVVDQQTRSKMEEMLLTWRTASPTGRELFGVVSQLAIERHIWGGDS
TQNAQSGSRDSGSISQAQVLSELEFVLGQKERLLLSSPHDDLTKHHIGILQQLRGMVQVG
VPQRDLQAILTQLRALTTPSPPPAPAPQPYGALPSYSPPPSITGRVIAPQPPYQSQPAYP
VNYEQPKQEAMDISRFLHAAAPVASTSTTPSVSMPDISGIFSALLKAGVVSASSTSTGAG
ASSKHEEPNEPADPERQARRAYRKLILSTKIKLTSSDVTRQRPRITDILYDRLPTQCKQC
GYRFSDNSVGKKLFEEHLDMHFRQNRKATQAVGRGHSRSWFVSLEDWVSADSGDSKGKGR
ADGRTVSSKAVAAKEAAKREAELRAMFVVVPPGDEAKAISCPICKEPLKSEFLEDDEEWV
WRNAVKKDDRIYHATCHAEAIASKSNLAVRLLGEGTSRSRSKTPEKATPPRAHATSNGEL
RQSETPTPSKLAGMKRKAEDDHATAVKHEGDGPQAKRVAT
NT seq
1923 nt
NT seq
+upstream
nt +downstream
nt
atgtcgctctatccacagacgacgacatatacccagatgccctacccagcccagggctat
ggggcagccgtcccgcctcagccctcgtactacccgcctccccccgctcctcagccggtc
ttccacctcgaccccaacatgttccgacgtgactatatgacgaggctggctaacttgaca
gttaattccagaccgatcatccagaccctctcgttgattgcgcaggactatagtcgctat
gcagatgtcgtcgtgcaatgcatcgaacaacatatccgaagggtgccgccgtggatgaag
ttaccatcgttttacttgttggacgccatatcgaagaatgtctacgatccatacgcccgc
catttcaccccgatcgtcgttcgtctattcctcgatacttatgaggtcgtcgaccaacag
actcgaagcaagatggaggagatgctgttgacttggcggacagcttcccctaccggccga
gagctcttcggggtcgtctctcagcttgcgatcgagcgtcacatatggggaggcgattct
actcagaatgctcagtccggtagtcgtgacagcggatctatctcacaagcacaagtccta
agcgaacttgaattcgttctcggccagaaggagcggctactgctatccagcccccatgac
gacttgaccaaacatcatattggtatacttcagcaacttcgtggaatggtgcaagtaggc
gtgcctcaacgagatcttcaagctatcctcacccaacttcgagctttgacgactccatct
ccgcctccggcgcccgctcctcagccgtacggtgcactcccatcctactctccgcctccc
tccatcaccggccgcgtgattgcgccacagcctccttatcagtctcagccggcataccct
gtcaattacgagcaacctaagcaggaggcaatggatatatctcgtttccttcatgctgct
gcccccgttgcctcgacttcgactaccccgtctgtgtcgatgcctgatattagcgggatt
ttcagcgctctcttaaaggctggtgtggtctcggcttcaagcacatctactggcgctggc
gcaagctcgaagcacgaagaaccgaacgagcctgcggaccccgaacgtcaagcgcgacga
gcgtatcggaaactaatcctgtcgacgaaaatcaaattgacaagctctgatgtcaccaga
caacgtccgagaatcaccgacatattgtacgaccgtttgcctacgcaatgcaagcaatgc
ggctaccggttctccgacaattccgttggcaagaagttgttcgaggagcatctcgacatg
cacttccgtcaaaatcgcaaggcgacgcaagcagtcggtcgcgggcacagccgaagctgg
tttgtcagcctggaggattgggttagcgctgactccggtgatagcaagggcaaaggtcgt
gccgacggtcggacggtcagttccaaggctgtggctgcaaaagaagctgcaaagcgtgag
gctgagctgagggcgatgtttgttgtcgtaccccctggcgatgaggcgaaggcgatatca
tgtccgatctgtaaggagccacttaagtctgagttccttgaggacgacgaggagtgggtg
tggcgaaatgctgtaaagaaggatgataggatttaccatgcaacatgccatgcggaggca
attgcgtcgaaatcgaacttagccgtacgtttactgggtgaggggacgagccgtagcagg
tcgaagacccctgagaaggcgacccctccgagagcgcacgcgacatcgaacggcgagttg
aggcagtccgagacgccaacgccgtcgaagctagcaggtatgaagcgtaaagctgaagac
gatcacgctactgctgtcaagcacgagggcgatgggccacaggcaaagcgagtagcgaca
taa
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integrated database retrieval system
