Dichomitus squalens: DICSQDRAFT_88817
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Entry
DICSQDRAFT_88817 CDS
T03133
Name
(RefSeq) eukaryotic translation initiation factor 4A-like protein
KO
K12614
ATP-dependent RNA helicase DDX6/DHH1 [EC:
5.6.2.7
]
Organism
dsq
Dichomitus squalens
Pathway
dsq03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
dsq00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
DICSQDRAFT_88817
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
dsq03019
]
DICSQDRAFT_88817
03036 Chromosome and associated proteins [BR:
dsq03036
]
DICSQDRAFT_88817
Enzymes [BR:
dsq01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
DICSQDRAFT_88817
Messenger RNA biogenesis [BR:
dsq03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
Common to processing body (P body) and stress granule
DICSQDRAFT_88817
mRNA degradation factors
5'-3' decay
Decapping complex
DICSQDRAFT_88817
Chromosome and associated proteins [BR:
dsq03036
]
Eukaryotic type
Gene silencing
piRNA pathway
DICSQDRAFT_88817
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_19
NA-iREase2
CMS1
Motif
Other DBs
NCBI-GeneID:
18844784
NCBI-ProteinID:
XP_007367461
JGI:
88817
UniProt:
R7SU64
LinkDB
All DBs
Position
Unknown
AA seq
498 aa
AA seq
DB search
MAQQPRPSSSTSHTENWKTGLRPPPKDYRPQTEDVTATKGVEFEDMFLRRELLMGIFEAG
FERPSPIQEEAIPIALTKRDVLARAKNGTGKTAAFVIPSLQQVDVSKNKIQALLLVPTRE
LALQTAQVCKTLGKHMGIQVMVTTGGTTLKDDIIRLSEAVHVLVGTPGRILDLAGKGVAD
LSECPVFVMDEADKLLSPEFAPVMEQLLSYLPKTRQVMLFSATFPMIVKDFKEKHMKSPY
EINLMEELTLRGVTQYYAYVEERQKVHCLNTLFSKLQINQSIIFCNSTNRVELLAKKVTE
LGYSCFYSHAKMLQSHRNRVFHDFRNGVCRNLVCSDLLTRGIDIQAVNVVINFDFPKNAE
TYLHRIGRSGRFGHLGLAINLVTYEDRFNLYKIEQELGTEIQPIPQQIDKGLYVAPTGPT
EDNTEQQQKGKAVAQQPQPQPQPAQRQAHQPVPQVQTRQQASPQVMYQSGPPQQRVNGGP
VPQQQPYPNGYRGVPVAR
NT seq
1497 nt
NT seq
+upstream
nt +downstream
nt
atggctcagcaacctcgcccttcctcatccacctcgcatactgagaattggaagacgggt
ctgcgcccaccaccaaaagactaccgtccgcagaccgaagacgtgactgccaccaaagga
gtcgagttcgaagacatgttccttcgccgggaacttctcatgggcatctttgaggccggc
tttgaaagaccgtcccccatccaggaagaggccattcccatcgcactcaccaaacgcgac
gtcctcgcacgcgccaagaacggtacaggcaagactgctgcattcgtcatcccctccctt
cagcaggtcgacgtgagcaagaacaagattcaggcgttgctcctcgtccccacgcgtgag
ctcgcgttgcagaccgcccaggtttgcaagacgcttgggaagcatatgggcatccaggtg
atggtcaccacgggcggcacgaccctcaaagacgatatcatacgtctatctgaggccgta
catgtcctcgttggtacccctggacgtatactcgaccttgcgggcaagggcgttgcggat
ctcagcgagtgccccgtcttcgtcatggacgaggcggataagctactgtcgcccgagttc
gcacccgtcatggaacagctgctctcctacctccccaagactcgccaggtcatgctgttc
agcgctacgttccctatgattgtgaaggacttcaaagagaaacatatgaagtccccgtac
gaaatcaacctcatggaggagctcactctccgtggtgtcacccaatattacgcctatgtc
gaagaacggcagaaggtgcactgtctcaatactttattctccaagctgcaaattaaccag
tctatcatattctgtaactctacaaatcgcgtcgagctcctcgccaagaaggtcaccgag
ctcggctattcgtgtttctactcgcacgcgaagatgctgcagtcccaccgcaaccgcgtc
ttccatgacttccgcaacggcgtatgccgcaacctcgtttgctcggacctgctcactcgc
ggtatcgacatccaggccgtcaacgttgtcatcaatttcgacttccccaagaacgcggag
acgtacctccaccgtatcggccgttcgggtcggttcggccatcttggtctcgcaatcaac
ctcgtcacatacgaggaccgtttcaacctgtacaagatcgagcaggagctcggtacagag
atccagccgatcccccagcagatcgacaagggcttatacgtcgcgccgacgggacctacc
gaggacaacacggagcagcagcagaagggcaaggccgttgctcagcagccccaacctcag
cctcagcctgcacagagacaggcgcaccagcctgttccccaggtgcagacgagacaacag
gcatcgccgcaggtcatgtaccaaagcgggcctccgcagcaacgcgtgaacggtggtccc
gtgcctcaacagcagccatatccgaacgggtaccgcggggttccagtagcgcgatga
DBGET
integrated database retrieval system
