Dichomitus squalens: DICSQDRAFT_93477
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Entry
DICSQDRAFT_93477 CDS
T03133
Name
(RefSeq) beta and beta-prime subunits of DNA dependent RNA-polymerase
KO
K02999
DNA-directed RNA polymerase I subunit RPA1 [EC:
2.7.7.6
]
Organism
dsq
Dichomitus squalens
Pathway
dsq03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
dsq00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
DICSQDRAFT_93477
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
dsq03021
]
DICSQDRAFT_93477
Enzymes [BR:
dsq01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
DICSQDRAFT_93477
Transcription machinery [BR:
dsq03021
]
Eukaryotic type
RNA polymerase I system
RNA polymerase I
Core subunits
DICSQDRAFT_93477
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_1
RNA_pol_Rpb1_4
Motif
Other DBs
NCBI-GeneID:
18845018
NCBI-ProteinID:
XP_007370660
JGI:
93477
UniProt:
R7SKE0
LinkDB
All DBs
Position
Unknown
AA seq
1724 aa
AA seq
DB search
MNISQPVPSTVASISFSFLTTEDVRRISVKQIVNPVLLDELNSPNIGGLYDPALGPSDKN
SICATCRLAYYTCPGHFGHIDLPAPVFHPLFMVNAYHLLRGTCLFCHRFKVSRFVLCKFV
AKLRLLEYGFLVAAKALDDIHYSTIKKRGVEDDDDEPAETYEAYEQRINLYVAAHMATAS
SSKRDAYKDGLVYQARKDVIQDFIKTAMLRKCQNANCNAHGYTFRKEGYTKIIEYDLTIK
QKAQHDAMGLRRPNVMLDEQKSKLKSQTSVQTNGHSGDPSDEDTSSDEEEGENVFSNDEE
EDEHERPANGQSLPKSASGKVKTTRGRNERVVPPEECRAHLRRLFRNESVMCSLLFGRHG
PFAPLSQHNLSLASADMFFLEVLPVSPTRFRPPAKMGDMLFEHPQNELLSKVLTTSYRLR
DLNNSLRLASEKGSDVDEAARRRILQSLLDSLIQLQVDVNSYIDSSKNPQPIRQGRLPPA
GVKQGLEKKEGLFRKHMMGKRVNYAARSVISPDVNIEPNEIGIPPVFARKLTFPEPVTPN
NFHELRQLVITGARGYPGATIVEYEDGHQQFLDKLTLEQRTAIANQLLTPQEGSHGSAQR
HGLYTSTPAVNKKVYRHLRDGDILILNRQPTLHKPSMMCHKARVLHGEKTIRMHYANCNS
YNADFDGDEMNIHFPQNQVARAEAYYIANTDNQYLVPTSGKPLRGLIQDHVVAGVWMTAQ
DSFFTREEYFQLLYGALRPEDEPLEGKRRLVTLPPTIWKPQPLWTGKQIISTVMKNITPS
VFEGLNLHAQAKVPGHLWGKDSKEDQVVFMDGELLSGVLDKSAFGASDFGLVHSVYELYG
ADTAGRLLGILSRLFTKFLQHRAFTCRMDDLALTPDGNAKRAELLVTGANLGTEGAMENF
PVLKTTQDDEKSQVLRSLLEDVLRDDSKMAGLDVTVKGKLAKLTKSIADAVMPHGLLRQF
PHNHMQAMTVSGAKGSAVNAQQISCALGQQELEGRRVPTMVSGKTLPSFKPFETRAMAGG
YVASRFLTGVKPQEFFFHCMAGREGLIDTAVKTSRSGYLQRCLIKHLEGIRVHYDNTVRG
SDSSVYQFNYGGDSLDVTKQKHLTQFEFIARNEVSFVERLQPKSLGGHVSEDAVDYMKKI
VKYKDKKHKRDRMLPTISKYPPQRNVGSTSELFADKVEEYIQKNPHGLIKEKEGEARFKR
RRAPLSKKNFRLLTSVKYMRSLVEPGEAVGLLASQGVGEPSTQMTLNTFHFAGHGAANVT
LGIPRLREIVMTASQKPKTPSMTMRVRPGTTPSDITSFCKKASRLALSHVVDRVSVTEQL
ILKGESRSKEFRIDLDFYPRSEYEQEYNVTPLEILASFGHKFPQIFRKELQVELKKLDAD
LKSQRAELGKGRAVREHRGAAAAEEEQGEEPNGRGRDEDDGASEIGDGDAVTSKMKRQRK
EQATYEDDDEEADEGGELDDMDIEAAYASSPEDDAVDSDVDEDAPSMAAEHGRIESSFMD
NLPSATSFSFRDSGCTIGLQFGSTMPKLLLVGLVERVCLKTVVREIPGITDCFMNEEDGK
NGEKIYSLTTNGSNIPGLWQFARGHGESIIDEDGIYSNDIYALLCAYGVEAARAAILKEI
GGVFAVYKIDVDIRHLELIADYMTFDGGYKPFNRKGISTNPSPLLKASYETTAAFLSDAT
LHGDFDDLTTPSGNIVMGRLSHTGTGVFDIVMPVDQMDTTIDMS
NT seq
5175 nt
NT seq
+upstream
nt +downstream
nt
atgaacatctctcaacctgttccgtctacagtcgcgagcatctccttctccttcctcacc
acggaagatgtccggcgcatctcggtcaagcagatcgtgaatcccgtcctccttgacgag
ctcaacagcccaaacataggagggctatatgacccggcattaggaccgagtgataagaac
tctatttgtgcaacatgtcgtttggcctattacacttgcccgggtcattttggccacatc
gacctcccagcacctgtcttccatccgttgtttatggtgaatgcttaccatctgcttcgt
ggtacttgcctattctgccataggttcaaagtcagtcgatttgtgctgtgcaagttcgtc
gcgaagctccggttgctcgagtatgggttcctcgttgctgcaaaggcgttggacgatatt
cactatagcacaataaagaagcgaggtgtagaggacgacgatgacgagcctgcggagacc
tacgaggcttacgagcagcgtatcaacctttatgtcgctgcgcacatggccaccgcatcc
agcagcaagcgtgacgcatataaggatggtctcgtgtaccaagcgcggaaagacgtcata
caggacttcatcaagaccgccatgctgaggaagtgccagaacgcgaactgtaatgcccat
ggctacactttccgcaaggaaggctacacgaagatcatcgagtacgacctgaccatcaag
cagaaggctcagcatgacgccatgggtttgcgtcgaccgaacgtaatgcttgatgagcag
aagtccaagctcaagtcgcaaacgtcggttcagacaaatgggcactcaggagatccgtcg
gacgaggacacgtcaagcgatgaggaggagggcgaaaatgttttctcgaacgatgaagaa
gaggatgagcacgaacgccctgcgaacggacagtcactgcccaagtctgctagtggaaaa
gtcaagacgacacgcgggcggaatgagcgtgttgtgcctcccgaggaatgccgcgcacat
ctccgccgtctcttccgcaacgagtctgtcatgtgttcgctgcttttcggccgacatgga
cctttcgctccgctcagccagcataatctctccctcgcatctgccgacatgttcttcctc
gaggttctccctgtaagcccaacacgcttccgtcctcccgcgaagatgggcgatatgctg
ttcgaacaccctcagaacgagctcctgtcaaaggttttgacgacctcgtaccgtctgcga
gacttgaacaacagtcttcgtctcgcctcggaaaagggttctgacgtcgatgaagctgct
cggagacgtatcctccagtcactacttgactcccttatccagctacaggttgacgtcaat
agctacatcgacagtagcaagaaccctcagcccatccgacaaggccgcttgccccccgct
ggtgtgaagcaagggctggagaagaaagaaggtcttttccgtaaacatatgatgggcaaa
cgtgtcaattacgccgctcgctccgttatctcccccgacgtcaatattgagcctaacgag
attggcattccacctgtcttcgcgcgcaaattgacgttcccggagcctgtgacgccgaac
aacttccacgaactgcggcaactggtcatcacgggcgctcgtggctaccccggcgccaca
atcgtcgagtacgaagatgggcatcagcaattccttgacaagctcactcttgaacagcgg
acagccatcgcgaaccaattgttgacgccgcaagagggctcccacgggtctgcccaacgc
catggcctgtacacttccacgcctgctgtcaacaagaaagtgtacaggcaccttcgagac
ggcgatattctcattctcaaccgtcagccgaccctccacaagccgagtatgatgtgccac
aaagcgcgcgttttgcacggcgagaagacgatccggatgcattatgccaactgtaactcg
tacaacgccgatttcgacggtgacgaaatgaatatacactttcctcagaatcaagtcgcg
cgcgcggaggcgtactacatcgccaacactgacaatcagtacctagtcccgacgtccgga
aagcccttgcgcggtcttatccaggatcatgtcgtggctggcgtctggatgacagcccaa
gactcgttcttcacacgagaagagtatttccagctcctctatggcgcgctacgtccggaa
gacgagccacttgaagggaaaaggcggcttgtcacgcttccgccgacgatatggaagccg
caaccgttgtggacgggcaaacagattatctccaccgtcatgaagaacattacaccgagc
gtcttcgaaggtctgaatctgcatgcgcaggccaaggtccctggtcacttgtggggcaag
gactctaaagaagatcaggttgtcttcatggacggcgagcttctgtccggcgtcttggac
aaatctgcatttggcgcttcggacttcggactcgtgcactcagtctacgagctttatggc
gcggataccgcgggaagacttcttggcatcttgagcaggctgttcacgaaattccttcag
catcgagcctttacgtgtcgtatggacgatctcgcccttacacccgatggcaatgcaaag
cgtgcagagcttctcgtcacaggcgcgaacctagggacggaaggtgccatggagaacttc
ccagttctgaagaccacgcaggatgacgagaagtcccaggtcttgcgttcacttctggaa
gacgttttgcgagacgacagcaagatggctggccttgacgtcacggtcaaaggcaaactt
gccaagctcacgaagtccatcgccgacgctgtcatgcctcacggcctgctccgccaattc
ccccacaaccacatgcaggccatgacagtctcaggggcgaaaggtagcgctgtcaatgca
cagcagatatcctgcgcgctcggtcaacaggagctggaaggccgtcgtgtgcctacgatg
gtcagcggaaagaccttgccgtcgttcaagccgttcgagactcgagcaatggctggcgga
tatgtcgcgagtcgcttcctcactggcgtcaagccgcaagaattcttctttcattgcatg
gccggacgcgagggtcttatcgacacagccgtcaagacgtctcgctcagggtacctccag
cggtgtcttatcaagcatcttgaagggatccgggtacactatgacaacaccgtccgcggg
agcgattcctcggtataccagttcaattacggtggcgattcgctcgacgtcacaaagcag
aagcatctcacccagttcgagttcatcgcccgcaacgaggtgtcgttcgtcgagcgcctc
cagcccaaatctctcggtggccatgtcagtgaggacgcggtcgactacatgaagaagatc
gtcaagtacaaggacaagaaacataagcgggacagaatgctgccgacgatctcgaagtac
ccgccgcagcgaaacgtaggtagtacttccgaactcttcgctgataaggtggaggaatac
atccagaagaacccacatggtctgatcaaggagaaagagggcgaggcacggttcaagcgc
cgaagagctcctctcagtaagaagaacttccgtttgttaaccagtgtcaagtacatgcgc
agtttggttgagcctggggaggccgtgggtctgctcgcatcacagggcgtcggagagccg
tcaacccagatgaccctgaatacgttccactttgcaggccacggagcagctaacgttacg
cttggtattccccgtctgcgggagatcgtgatgacggcttctcagaagcctaagacaccg
tcgatgactatgagggtccggccaggtacgaccccatcggacatcacgagcttctgcaag
aaggccagtcgtctcgcactctcccacgtcgtcgacagggtctcggtcaccgagcaactc
atcctaaaaggggagtcacggagcaaggaattcaggattgacctcgacttctatccgcgt
tctgagtacgagcaagagtacaacgtgacaccactcgagattctcgccagtttcggtcac
aagttcccccaaatcttcaggaaagagcttcaggtggagctcaagaagctggacgccgat
ctaaagagccagcgcgcggagcttggcaaaggccgagctgtgcgggagcatcgaggcgcc
gccgccgctgaggaagagcaaggagaagagcccaatggtcgtggacgagacgaagatgac
ggagcgagcgagatcggtgacggcgatgcggtgacttccaagatgaaacgtcaacgaaag
gagcaagcgacttacgaagacgacgatgaggaggccgatgagggaggcgaactggacgac
atggacatcgaagctgcgtacgcgtcgtctcccgaagacgacgcggtcgactcagacgta
gatgaagatgccccttcaatggcggcggaacatggtcgcatcgagagctcgttcatggat
aacctacccagcgccacatcattctccttccgggattccggctgcacgattgggctacag
ttcggatcaaccatgcccaaactattacttgttggcttagttgaacgagtctgtctgaaa
acagtcgtacgcgagattccaggcatcacggactgtttcatgaacgaggaggacggtaag
aatggggagaagatctattctctgactaccaacgggtcaaatattcccggactgtggcag
ttcgcgcgtgggcatggtgagagcatcatcgacgaggacggcatctactccaatgacatc
tacgcgctcctctgtgcttacggcgtagaggccgcacgcgccgccatcctgaaggaaatt
ggcggtgtattcgctgtgtacaagatcgacgttgacatccgtcacctggagcttatcgca
gattatatgacgttcgatggcgggtacaagccgttcaatcgaaaaggcatttccaccaat
ccgtcgcctctcctcaaggcgtcctacgagaccacggcagcgttcttgtccgacgccacg
ttgcatggtgacttcgacgacctgactacgccatccggaaacatcgtcatgggtaggcta
agccatacgggtacaggggttttcgacattgtgatgccggttgaccaaatggacaccacc
attgatatgtcatga
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integrated database retrieval system
