Dichomitus squalens: DICSQDRAFT_95987
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Entry
DICSQDRAFT_95987 CDS
T03133
Name
(RefSeq) hypothetical protein
KO
K07573
exosome complex component CSL4
Organism
dsq
Dichomitus squalens
Pathway
dsq03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
dsq00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
DICSQDRAFT_95987
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
dsq03019
]
DICSQDRAFT_95987
Messenger RNA biogenesis [BR:
dsq03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Core exosome factors
DICSQDRAFT_95987
Prokaryotic type
Archeal mRNA degradation factors
Exosome components
Core exosome
DICSQDRAFT_95987
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
EXOSC1
ECR1_N
Motif
Other DBs
NCBI-GeneID:
18845199
NCBI-ProteinID:
XP_007360459
JGI:
95987
LinkDB
All DBs
Position
Unknown
AA seq
185 aa
AA seq
DB search
MSSDVVLPGQPVPLPRGPMPQIGSGIYSRDGIVRASLIGVPSYSGSTLEIKRTRPRPPAP
NSVVLGTVTRMSPLQAVLSITVVDGVPLPAGEEFTGVVRVQDVRATEKDKVKIADCFRGG
DVVRGLVLSLGDARSYYVTTARNDLGVIFATSEAGATMEPVSWQEMRCPKTGKIEKRKCA
KPEGM
NT seq
558 nt
NT seq
+upstream
nt +downstream
nt
atgtcgtccgacgtcgtgctacccggccagcctgtccccctaccgcgtgggcccatgcca
cagattggcagcggcatttactcgcgggatggcatcgtgagggccagcttgattggtgtc
ccctcgtattccggatctacgttagaaatcaagcgaacccgcccacgacctcctgccccg
aattcggtcgttctggggaccgtgacccgtatgtctcctctacaagcggttctttcgatc
accgtggtggacggcgtaccactccccgctggcgaagagttcactggggtggtgcgcgta
caagatgtgcgcgctactgagaaagacaaggtgaaaatagcggattgcttccgaggaggg
gacgttgtccgaggtctagtgctctctttgggtgatgcaagaagctattatgtaactact
gctcgaaatgacttgggagtcatattcgcgactagtgaggctggtgcgactatggaacca
gtatcgtggcaagagatgcgctgtccgaagacagggaagatcgagaaacgcaaatgcgcg
aagccggagggcatgtag
DBGET
integrated database retrieval system
