Dichomitus squalens: DICSQDRAFT_99082
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Entry
DICSQDRAFT_99082 CDS
T03133
Name
(RefSeq) hypothetical protein
KO
K03141
transcription initiation factor TFIIH subunit 1
Organism
dsq
Dichomitus squalens
Pathway
dsq03022
Basal transcription factors
dsq03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
dsq00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
DICSQDRAFT_99082
09124 Replication and repair
03420 Nucleotide excision repair
DICSQDRAFT_99082
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
dsq03021
]
DICSQDRAFT_99082
03400 DNA repair and recombination proteins [BR:
dsq03400
]
DICSQDRAFT_99082
Transcription machinery [BR:
dsq03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIIH
DICSQDRAFT_99082
DNA repair and recombination proteins [BR:
dsq03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TFIIH complex
DICSQDRAFT_99082
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
BSD
PH_TFIIH
Motif
Other DBs
NCBI-GeneID:
18845422
NCBI-ProteinID:
XP_007361978
JGI:
99082
LinkDB
All DBs
Position
Unknown
AA seq
605 aa
AA seq
DB search
MPSIVCSAQASYKKLPGLLELTDTHLQWTKTGDKSPAVKFPYAEAAALSRSKAGADQVRL
KIGLVSNEAGHNFTFTSPQAVALAERDKFEAELTTIIARNRAPPPQAQVPAVPASKARQV
ATPAPVTNGSAAGTPMRPPAPHARPSQSRAVSVASESRASDTPVGDSPTTDFRLRKKVLV
STPELAQLHRELVMGGHITENEFWEGREHLLLAQAAAESQKRGKPGQLVDPRPQSVDGEV
KIIITPQLVHDIFEEFPVVAKAYSENVPEKLSEAEFWSRYFQSRLFNAHRASIRSSAAQH
VVKDDPILDKYLEKDDDDIEPRRLREERVDTFIDLGATSVDHEETGNERDITMQAGKQRA
VLPLIRKFNEHSTRLLDTALGGPSVKRRRLENGEERYAQLDLEDLHDNQSSAGIILDMKD
RQRYFDGRANGAEQGDPEGPRVALREALQQAKASTTGWSANLAQLRIEKKAGDAALISMT
QNVQSRLDVKQRKQDIPEALFRQMTTCQTAANEFLRQFWLAIYPPANEFQQLSVATPAQK
TAKALKMIAYLSKTHEKVEALVAEAQREQVDQNRIRVAMKPILDAVDKALSFWQFKNAAK
APGVR
NT seq
1818 nt
NT seq
+upstream
nt +downstream
nt
atgccttccatcgtctgctccgctcaggcgtcctacaaaaagctccctggtctcctcgaa
ctcactgatacccacttgcaatggacaaagactggtgacaaaagtccagctgtgaagttt
ccgtatgcggaggccgcggctctgtcgcgtagcaaggctggggcagatcaggtgcggttg
aagattggattggtaagcaatgaggccggccacaacttcacgttcacgtctccacaagcc
gtcgcgctcgccgaacgagacaagttcgaggccgagctcacaaccatcatcgcccgcaac
cgtgcaccgcctcctcaagctcaggtccctgctgtcccagcatccaaagccagacaagtc
gcaacccctgccccagtcacgaatggaagtgctgctgggacgcctatgcggccgccagcg
ccacatgcccggccatcccaatcaagagctgtgtctgtggcgagcgagtcgagggcttct
gatacacccgttggcgacagccccacgaccgatttcaggttacggaaaaaggtgctggtg
agcacgccggagctggcccagctccatcgggagcttgtcatgggaggacacatcacggag
aacgagttctgggaaggacgagaacatctgctcctagctcaggcggccgctgaaagtcag
aaacgcgggaagcctggtcagctcgtcgacccgcggccgcaatcggtggacggggaggtc
aagatcatcattacccctcagctcgttcatgatatcttcgaagagttccctgttgtggcg
aaagcatatagcgagaatgtgcctgaaaagctgtcagaagcggagttctggagtagatat
tttcagtcaaggctcttcaacgcccatcgagcgtccattcgttcctctgccgcgcaacat
gttgtcaaagatgatccaatattggacaagtacctggagaaggatgatgatgatatcgaa
cctcgaagactacgagaagagagagtcgatactttcattgacttgggtgcaacctccgtg
gatcatgaagagactggtaacgagagagacatcaccatgcaggcaggtaaacagcgggct
gtcctgccgctcatcagaaagttcaatgagcactctaccaggctgctggacaccgccttg
ggaggcccatctgtcaagcggagacgattagagaacggcgaggaacgatatgcgcaatta
gacctagaagacctgcacgacaaccagtcatccgccggcatcattctggacatgaaggac
aggcagcggtactttgatgggcgggcaaacggtgcagagcaaggagatcctgaaggcccg
cgcgttgcattgcgggaagcactgcaacaagccaaagcgagcacaacagggtggtccgct
aacctagcacagctcagaatagagaaaaaagctggagacgcagcgctcattagcatgaca
cagaacgtccagagcagattggacgttaagcaacggaaacaggatattcccgaggcgctg
ttccgtcagatgacgacatgccagacggcggcaaacgaattcctccgtcagttctggcta
gctatctatcctcccgcgaacgagttccagcagctgtccgtcgcgacgcctgcacaaaag
accgcaaaggcgctgaaaatgatagcgtaccttagcaagacgcacgagaaagtcgaggct
ctggtagcggaagcacaaagagagcaggtggaccaaaaccgcatccgagtggctatgaaa
cctattcttgatgctgtcgacaaagcgcttagtttttggcaattcaagaatgccgccaag
gcacctggagtcaggtga
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integrated database retrieval system
