Drosophila serrata: 110181377
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Entry
110181377 CDS
T06108
Name
(RefSeq) tRNA-splicing ligase RtcB homolog
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
dsr
Drosophila serrata
Brite
KEGG Orthology (KO) [BR:
dsr00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
dsr03016
]
110181377
Enzymes [BR:
dsr01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
110181377
Transfer RNA biogenesis [BR:
dsr03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
110181377
Prokaryotic type
tRNA splicing ligases
110181377
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RtcB
DUF6471
ACP_syn_III_C
Motif
Other DBs
NCBI-GeneID:
110181377
NCBI-ProteinID:
XP_020804766
LinkDB
All DBs
Position
Unknown
AA seq
503 aa
AA seq
DB search
MVVRSYNDELKYLEKVSDHCWRIKKGFQPNMNVEGCFYVNSRLERLMLEELKNSCRPGAV
GGFLPGVKQIANVAALPGIVGRSIGLPDIHSGYGFAIGNMAAFDMDDPLSVVSPGGVGFD
INCGVRLLRTNLYEKDVQPVKEQLAQSLFDHIPVGVGSKGIIPMNARDLEEALEMGMDWS
LREGYVWAEDKEHCEEYGRMLNADPAKVSMRAKKRGLPQLGTLGAGNHYAEIQVVDEIYD
KWSASKMGIEEKGQVVVMIHSGSRGFGHQVATDALVQMEKAMKRDKIETNDRQLACARIN
SVEGQDYLKAMAAAANFAWVNRSSMTFLTRQAFAKMFNTTPDDLDMHVIYDVSHNIAKVE
NHMVDGKERKLLVHRKGSTRAFPPHHPLIPVDYQLTGQPVLVGGTMGTCSYVLTGTEQGM
KETFGSTCHGAGRALSRAKSRRNIDYKEVLEKLDQIGIAIRVASPKLVMEEAPESYKDVT
DVVDTCHAAGISKSALNCDQLRL
NT seq
1512 nt
NT seq
+upstream
nt +downstream
nt
atggtcgtgcgctcgtacaacgatgagctcaagtacctggagaaggtgagcgaccactgc
tggcggatcaagaagggattccagcccaacatgaacgtggagggatgtttctacgtgaac
agtcgcctggagcgtctgatgctggaggagctgaagaactcctgtcgtccgggagctgta
ggaggcttcctgcctggagtaaaacagatcgctaatgtggcagcactacccggtatcgtg
ggtcgttcaattgggctgcccgacatccactccggctatggatttgccattggaaacatg
gctgccttcgacatggatgaccccttgtctgtggtgagtcccggaggcgttggattcgac
attaactgcggcgtccgcctgctgcgcacaaatctgtacgagaaggacgtgcaaccggtg
aaggagcagctagcccagtccctgttcgatcacatacccgtgggcgtaggctccaagggc
atcataccgatgaacgcccgcgacctggaggaggccctcgaaatgggcatggattggtct
ctgcgggagggctacgtctgggccgaggacaaagagcattgcgaggagtacggtcgaatg
cttaatgccgatcccgccaaggtgagcatgcgagccaagaagcgtggtctgccccagcta
ggaactctgggtgctggtaaccactacgccgaaatccaggtagtggacgagatctacgac
aaatggagcgcctcaaagatgggcatcgaggagaagggccaagtggtggttatgattcac
tccggaagccgtggctttggtcaccaagtggccaccgacgctctggtgcagatggaaaag
gccatgaagcgagacaagatcgagaccaatgaccggcagctggcctgcgctaggattaac
tcggtagagggacaggattacctcaaggccatggcggcggcggccaactttgcttgggtt
aaccgcagctcgatgaccttccttacgcgtcaggccttcgccaagatgttcaacaccaca
ccggatgatcttgacatgcatgtcatctacgatgtctcgcacaacattgccaaggtggag
aaccacatggtcgatggcaaggagcgaaaactgctcgttcaccgaaagggctctacgcga
gccttccctccgcatcaccctctcatccctgtggactatcagctcactggacaacccgtc
ctggtgggtggaaccatgggcacctgcagctacgttttgactggaacagagcagggcatg
aaggagaccttcggcagcacttgccacggagcgggtcgcgccctttcccgtgcaaaatct
cgccgtaatatcgattataaggaagtgctggaaaagctagatcagatcggtatcgccatt
cgagtagcttcgcccaagctggtcatggaggaggctccagagtcgtataaggatgtcacc
gatgtggtcgacacctgtcatgcggcgggcataagcaaaagtgcattaaattgcgaccaa
ttgcggttataa
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