Drosophila serrata: 110181835
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Entry
110181835 CDS
T06108
Name
(RefSeq) regulator of nonsense transcripts 1 homolog
KO
K14326
regulator of nonsense transcripts 1 [EC:
5.6.2.5
5.6.2.3
]
Organism
dsr
Drosophila serrata
Pathway
dsr03013
Nucleocytoplasmic transport
dsr03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
dsr00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
110181835
03015 mRNA surveillance pathway
110181835
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
dsr03019
]
110181835
Enzymes [BR:
dsr01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
110181835
5.6.2.5 RNA 5'-3' helicase
110181835
Messenger RNA biogenesis [BR:
dsr03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
110181835
mRNA cycle factors
Common to processing body (P body) and stress granule
110181835
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
UPF1_Zn_bind
AAA_12
AAA_11
UPF1_1B_dom
AAA_30
AAA_19
ResIII
SLFN-g3_helicase
DEAD
Helicase_RecD
AAA_22
AAA_16
UvrD-helicase
NPHP3_N
ATPase
nSTAND3
SRP54
AAA_32
AAA_5
AAA_10
Motif
Other DBs
NCBI-GeneID:
110181835
NCBI-ProteinID:
XP_020805398
LinkDB
All DBs
Position
Unknown
AA seq
1189 aa
AA seq
DB search
MSVDTYAPSSALSFLDMDDTELMPGADTQPTQYDYRDFTMPSNSQSQQGDQQQLDLHSRG
QTGGGGDSHPRLASITNDLADLQFEEEDDDAASSYVKELPAHACKYCGIHDPATVVMCNN
CKKWFCNGRGSTSGSHIINHLVRAKHREVTLHADGPLGETILECYSCGVRNVFVLGFIPA
KADSVVVLLCRQPCAAQNSLKDMNWDQEQWKPLIADRCFLPWLVKQPSEQGQLRARQISA
AQINKLEELWKENIEATFQDLEKPGIDSEPAQVLLRYKDGYQYEKTFGPLVDLEADYDKK
LKESATQENIEVRWDVGLNKKTIAYFTLAKTDSDMKLMHGDELRLRYVGELHSPWSETGQ
LIKVPDNFGDDVGLELKSSSNAPVKCTSNFSVDFIWKYTSFDRMTRALSNFAMDRNSVSN
YIYSRLLGHGRADANDEVLFRGPQPKLYSAPHLPDLNRSQVYAVKHALQRPLSLIQGPPG
TGKTVTSATIVYQLVKQHGGTVLVCAPSNTAVDQLTEKIHRTNLKVVRVCAKSREAIDSP
VSFLALHNQIRNMETNTELKKLQQLKDETGELSSADEKRYRSLKRGAENQLLEAADVICC
TCVGAGDGRLSRIKFTSILIDESMQSTEPECMVPVVLGAKQLILVGDHCQLGPVVMCKKA
ARAGLSQSLFERLVVLGIRPFRLEVQYRMHPELSQFPSNFFYEGSLQNGVCAEDRRLKLD
FPWPQPERPMFFLVTQGQEEIAGSGTSFLNRTEAANVEKITTRFLKAGIKPEQIGIITPY
EGQRAYLVQYMQYQGSLHSRLYQEIEIASVDAFQGREKDIIIMSCVRSNERQGIGFLNDP
RRLNVALTRAKYGIIIVGNPKVLAKQQLWNHLLNFYKDRKVLVEGSLNNLKESLIHFQKP
KKLVNSMNIGAHFMSTMMADAKEVMVAGSIYDRSGRPMPGQAAVNGSQFGSGGGTPYGGA
SPLGYGGGPAGSNSMHGYSLGAVGSGNNNYGGGGAGPSWAAAHLHHDSIGYISNEHGAAA
LGNMPVPVGMFMNMTNLPPRFYNQHQQAIMAAKQNRPMQQQLSGNFPSNAGTVSGGGAAG
GAVGSGNNAQSGGNKKSNKLGKLRTSSGQASGAAAAVGGPTSGGSVTPFTQQPVPLSLQM
TQPSGFALSQQPELSQDFGQISQMDGLLSQDVAFNVSGERSLNQFSQPY
NT seq
3570 nt
NT seq
+upstream
nt +downstream
nt
atgagcgtggacacgtatgcgcccagctcggcgctatctttcctggacatggacgacacc
gagttaatgccaggagcagatacacagccgacgcagtacgattatcgtgactttaccatg
ccgtccaattcgcagagtcagcagggcgaccagcagcagctggacctgcactctcgcggc
caaacgggaggcggtggggactcacatccgcgcctggccagcatcaccaacgatttggcc
gacttgcagtttgaggaggaggacgacgacgccgccagttcgtatgtaaaggagctacca
gcgcatgcgtgcaaatactgtggcatccatgacccagccacagtggtgatgtgcaacaat
tgcaaaaagtggttctgcaacggacggggcagcacctctggttcgcatattatcaaccat
ttggtgcgggcgaagcatcgcgaggtaaccctgcacgccgacggacccctaggcgagacc
atactcgaatgctattcgtgcggcgtgcggaatgttttcgtgctgggcttcatcccggcc
aaggcagactctgtggtggtgttgctctgccgccagccgtgtgccgcccagaattcgctg
aaggacatgaactgggatcaggagcagtggaagccactaattgccgatcgttgcttcctg
ccatggctggtgaagcagccgagcgaacagggccagttgcgggcacggcaaatctcggca
gcccagatcaacaagctggaggaactgtggaaggagaatatcgaggccacgttccaagat
ctggagaagccgggcattgactcggagccggcgcaggtgctgttgcgttacaaggacggt
tatcagtacgagaagactttcgggccgctggtcgacctcgaggctgactacgacaagaaa
ctgaaggagtctgccacccaggagaacatcgaggtgcggtgggacgtgggcctgaacaag
aagaccattgcctactttacgctggccaagaccgactcggatatgaaactgatgcatggt
gacgagctgcggctgcgctacgtcggtgagctacatagtccgtggagcgagaccggccag
ctaatcaaggtgccggacaactttggcgacgatgtcggcctggagttgaagtcctcctcc
aacgcgccggtcaagtgcaccagcaacttctccgtggattttatctggaagtacacctcc
ttcgatcggatgacccgcgccctgagcaactttgccatggaccgcaactcggtgtcgaac
tacatctactcgcgcctgctgggtcacggccgtgccgatgccaacgacgaggtgctgttt
cgcggtccgcagcctaagctgtatagcgcaccgcatctgccggatctgaatcgcagccag
gtgtatgccgtgaagcatgccctgcagcgtcccctgtccctcatccagggaccgccgggc
acgggcaagacggtgacctcggccacaatagtctaccagctggtaaagcagcatgggggc
actgtgctagtgtgcgcccccagtaacacggccgtcgaccagctcacggagaagatccat
cggacaaacctgaaggtggtgcgggtatgcgccaagagccgcgaggccatcgacagtccg
gtaagtttcctcgccttacataaccagatccgcaacatggagaccaacacggagctgaag
aagctgcagcagctcaaggacgagaccggagagcttagttccgcggacgagaagcgctat
cgcagtctaaagcgtggtgcggagaaccagctgctggaggccgccgatgtcatctgctgc
acgtgcgtaggcgctggagatgggcggttgtcacggatcaagttcacctctatcctcatc
gacgaatcgatgcagtccacggagccagagtgcatggtaccggtggtgctgggagccaag
cagctaatccttgtcggcgatcactgtcagctgggtccggtggtcatgtgcaagaaagcc
gctcgcgccggcctctcgcagagtctgttcgagcgcctggtcgttctgggcatccgtccg
ttccgcctggaggtgcagtaccgcatgcatccggagttatcccagttcccgtccaacttc
ttctacgagggctcactgcagaacggcgtctgcgccgaggatcgacgtcttaaactggac
tttccgtggccgcagccggagcgacctatgtttttcctggttacccagggccaggaggaa
atcgcaggctccggcacctcgtttcttaatcgtaccgaggcggccaatgtggagaagatc
acaacgcgcttccttaaggcgggcatcaagccggaacagatcggtatcatcacaccgtac
gagggtcaacgggcctacttggtccagtatatgcaataccaaggcagcctccattcgcgc
ctgtatcaagagattgagatcgccagcgtggatgcgttccagggacgtgagaaggacatc
atcattatgtcgtgcgtgcgctcaaacgagcggcaaggcattggcttcctcaacgatccc
cgacgcctcaatgtggcccttactcgtgccaaatacggcatcattatcgtgggcaatccc
aaggtgctcgccaagcagcagctctggaaccatctgctcaacttctacaaggaccgcaag
gtgctcgttgagggttcactgaacaacctcaaggagtccctcatccatttccaaaagccg
aagaagctggttaatagcatgaacattggggctcacttcatgtctaccatgatggccgat
gccaaggaggtgatggtggccggctctatctacgatcgtagcggtcgcccgatgccaggc
caggcagcagttaacggctcccagtttggtagtggcggtggaactccctacggcggagcc
tctccccttggttacggcggtggccccgccggctccaactccatgcacggctacagcctg
ggcgctgtcggtagtggcaataacaactatggtggcggtggtgcaggccctagttgggca
gctgctcacctgcaccatgactccattggctacatatccaatgagcatggcgccgccgct
ttgggtaacatgcccgtgcccgtgggcatgttcatgaacatgaccaatctgccgccgcgt
ttctataaccaacatcagcaagcaatcatggccgccaagcagaatcgacccatgcagcag
cagctgtccggcaacttcccctcaaacgctggcacggtcagtggaggcggcgccgcagga
ggagccgtcggttcgggaaataatgcacagtctggcggcaacaagaaatccaataagctg
ggcaagctacggacatcgagtggacaagcaagtggcgccgcagcagcggttggaggacca
accagcggtggtagtgtgactccatttacccagcaaccggtgccattgtcgctgcaaatg
acgcagccaagcggatttgctttatcgcagcagccggagctatcgcaggactttggacaa
atatcacaaatggacggtttgctctcccaagatgtggcctttaacgtgtcgggcgaacgc
agtttgaatcagttctcacagccttattga
DBGET
integrated database retrieval system
