Drosophila serrata: 110187640
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Entry
110187640 CDS
T06108
Name
(RefSeq) symplekin
KO
K06100
symplekin
Organism
dsr
Drosophila serrata
Pathway
dsr03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
dsr00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
110187640
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
dsr03021
]
110187640
03019 Messenger RNA biogenesis [BR:
dsr03019
]
110187640
Transcription machinery [BR:
dsr03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
110187640
Messenger RNA biogenesis [BR:
dsr03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage stimulation factor (CSTF) complex
110187640
U7-dependent histone pre-mRNA processing factors
110187640
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Symplekin_C
SYMPK_PTA1_N
Adaptin_N
Cnd1
DUF7943
PPP2R1A-like_HEAT
HEAT_GCN1
TPR_DNAAF5
Motif
Other DBs
NCBI-GeneID:
110187640
NCBI-ProteinID:
XP_020812706
LinkDB
All DBs
Position
Unknown
AA seq
1161 aa
AA seq
DB search
MDSIIGRSQFVSETANLFTDEKTATARAKVIEWCNELSAASATAKCELLAKIQETVLGSC
SELAEEFLEPVLSLAHDQNMEVRKQVVAFVEQVCRVKVELLPHVINIVSMLLRDNSAQVI
KRVIQACGSIYKNGLQYLCNLVEPGDSAEQAWNILSLIKAQVLDMIDNENDGIRTNAIKF
LEGVIVLQSFADEDSLKREGDFSLADVPDHCKLFRRQKLQEEGNNIFDIMLQFHGTTHIS
SVNLIACTSSLCTVAKMRPVFMGAVVEAFKQLNTNLPPTLTDSQVSSVRKSLKMQLQTLL
KNRGAFEFSGTIRGMLVDLGSTSNEIQKLMPKMDKQETARRQKRILENAAQSLAKKARLA
SEQREMELDTEELERQKQKSTRVNEKFLAEHLRLPETVVDLVVEFLPHLPAEVPQIFLDE
YSPIRQMSLQQQVSNISRIFGEQLTEKRLGPGAATFSREPPMRIKQVQTVQPNNDSPSME
VDDESTRNMSEEELLRKEEATKKLRETMERAKGEQTVIEKMKERAKTLKLQEITKPLPRN
LKEKFLTDAVRRILNSERQCIKGGVSSRRRKLVTVIAATFPDNVRYGIMEFILEDVKQRI
DLAFSWLFEEYSLLQGFTRHTYVKTENRPDHAYNELLNQLIFGIGERCEHKDKIILLRRV
YLEAPILPENSIGHLVQLCLVNEFSQHGLELIKDLAVLRPPRKNRFVRALLNFSVHERAD
LRDRALAHLVSLYHIHKILPARIDDFALEWLKFVVLEAPPAIVFTQEFGRPTAESAWRED
TAKVCLGLALTLLPYKPEVYVEQISQVFVATSAELKRTILRSLDNPIKKLGVEDPTLLQL
IEDCPKGMETFVIRIIYILTERVPVPNLDLVRRVRDLYQHKVKDVRVMIPVLSGLSRAEL
IAVLPKLIKLNPAVVKEVFNRLLGIGAEFANQTMALSPTDLLVALHTIDPNVCDLKAVVK
ATSLCLAERELYTQEVLMAVLQQLVEVVPLPTLMMRTTIQSLTLYPRLANFVMNLLQRLI
MKQVWRQKVIWEGFLKTVQRMKPQSLPILLHLPPAQLVDALQQCPDLRPALSEYADSMQD
EPMNGSGITQQVLDIISGKSVDVFVTDESGGYISAEHIKKEVQDPSEIGVISTVSVLTSL
VPQPVPPPSSDINQPLPPGED
NT seq
3486 nt
NT seq
+upstream
nt +downstream
nt
atggatagcataattggacgcagtcagttcgtttcggagacggccaatctctttacagac
gaaaaaactgccactgcgagggcgaaggttattgagtggtgcaacgaactgtctgctgcg
tcggccaccgccaaatgtgagctgctggccaaaattcaggagacagtcctcggttcctgc
tcagagctggccgaggaattcctggagcctgtgctttcgctggcccacgaccagaacatg
gaggtgcgcaagcaggtggtcgcgttcgtagagcaagtgtgcagagtgaaggtggaactg
ctgccgcatgtaattaatatagtgtccatgctattgagggacaactcagcccaggttatc
aagcgggtgattcaggcctgtggcagcatttacaagaatggcttgcagtacttgtgcaac
ctcgtggaaccaggcgacagcgcagagcaggcttggaacatactgagccttattaaggcg
caggtcttggacatgattgacaacgagaatgacggcattcgcaccaacgccattaagttt
cttgagggcgtcattgtgctgcagagctttgccgatgaggatagtctgaagcgcgagggc
gacttctctctggcagatgtacccgatcactgcaagcttttccgccgtcagaagctgcag
gaggagggaaacaatatatttgatataatgttgcagttccacggcactacgcatatctcg
tctgttaatctgatcgcctgcacaagtagcctgtgcacggtggccaaaatgcggcctgtt
tttatgggagccgttgtggaggcctttaagcaactgaacaccaatctgccgcccactctc
accgactcccaagtgagttccgttcgcaagagtcttaaaatgcagctgcagacgcttctg
aagaatcgaggcgcgttcgagttttcgggcactattcgcggtatgctggtggacctcggt
tcgacgtcgaatgagatacagaagttaatgccaaagatggacaagcaggaaacggcacgg
cgtcagaaacgcattcttgagaatgccgcccagagtctggcaaaaaaagcgcgtttggcc
agtgaacaacgggagatggaactggacaccgaggagttggagcgacagaaacagaagtca
actcgagtcaacgagaagttcctggccgagcatctgcgccttcctgagaccgttgtggac
ctggttgtggagttcctgccacacctgccagctgaagtgcctcaaattttcctagacgag
tactcgccgatccgccaaatgtctctgcagcagcaggtgagcaacatttctagaatcttt
ggcgaacagttgacggagaagcgtctcggcccaggtgccgccaccttcagtcgggagccg
ccaatgagaatcaagcaagtgcaaacagtgcagcctaataatgatagtccttccatggaa
gtcgacgatgaatccactcgcaatatgagcgaggaggaactgttgcgcaaggaggaggca
acaaagaaactgcgcgagacaatggagcgagccaagggcgagcagactgtgattgaaaag
atgaaggaacgcgcaaagacgctgaagttgcaggagatcacaaaacctctgccacgtaat
ctgaaggagaagttcctcacagatgccgttcgtcgtatccttaactcagagcgtcagtgt
attaaaggaggtgtgtcgtctaggcggcgcaagctggttactgtgatagctgctactttt
ccggataatgtccgctacggcatcatggagttcatcttggaagacgtgaagcaacgcatc
gacttagccttttcgtggttgtttgaggagtattccctactgcagggattcaccaggcac
acctacgtgaaaaccgagaatcgtccggatcacgcctataatgagttgctcaaccagctc
atttttggcattggcgaacgctgtgaacacaaggataaaattatactgctgcggcgcgtt
tacctagaagcgccaattcttcctgagaactcaatagggcatctggtgcagctatgcctg
gtgaatgagttctctcagcatggactggagctcatcaaggatctggctgtgcttaggcct
ccgcggaaaaatcgttttgtgcgagcgttgctcaatttctctgtgcatgagcgcgcagat
ctgcgggatcgtgccctagcacacctagttagcctatatcatatccacaaaatcctcccc
gcacggatagatgattttgctttggagtggcttaagttcgtagtgctggaggcaccaccg
gctatagtttttacccaggaatttgggcgacccacagcggagtccgcttggcgcgaggat
accgccaaagtgtgccttggtctggccctcaccttgttgccctataagccggaagtttat
gtagagcagattagccaggtttttgtggccacctccgctgagctaaagcgtacgattctt
cgtagcttagacaatccgatcaagaagttaggcgtggaggacccaactttgttgcaacta
atcgaggattgtcccaagggcatggaaaccttcgtgatacgcataatttatatactgaca
gagcgtgtaccggtgcccaacctggatctggtgcggcgagtgcgagacctctatcagcac
aaggtcaaggatgtgcgtgtgatgatacccgttctaagtggactgtctcgcgcggagctc
attgcagtgctcccaaagcttatcaaactaaatccggcagtcgtaaaggaagttttcaac
cggctactcgggatcggagccgagttcgctaaccagacgatggccctgtcgccaacggat
ctcctagtggctctgcataccatagaccctaatgtctgcgacttaaaggccgtcgtaaag
gccacctccctgtgcctggccgaacgcgagctgtacacccaagaggtgctgatggctgta
ctacaacagttggtggaggtagttccgcttcctactctaatgatgcgtaccacgattcag
agcctgacgttatatccgcgcctcgccaatttcgtgatgaacttgctgcagcggctgata
atgaagcaggtctggcggcagaaggtaatctgggaaggcttcctaaagaccgtgcagcga
atgaagccgcagtccctgccgatactcctgcaccttccacccgcacagctggtagacgcc
cttcagcagtgccctgacttgagaccagctctgtccgagtacgcggatagtatgcaggat
gagccgatgaacggcagtggcattacccagcaggtgctggacatcatatccggcaaatcg
gttgatgtatttgttacggacgaaagtggcggctacatcagcgctgagcacattaaaaaa
gaagttcaggatccatcagaaattggcgttatttccacagtttctgttttgacatcttta
gtgccgcaaccagttccaccacccagcagcgatataaatcaaccattgccgcctggcgag
gattag
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integrated database retrieval system
