Drosophila serrata: 110189216
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Entry
110189216 CDS
T06108
Name
(RefSeq) LOW QUALITY PROTEIN: uncharacterized protein LOC110189216
KO
K14400
pre-mRNA cleavage complex 2 protein Pcf11
Organism
dsr
Drosophila serrata
Pathway
dsr03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
dsr00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
110189216
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
dsr03021
]
110189216
03019 Messenger RNA biogenesis [BR:
dsr03019
]
110189216
Transcription machinery [BR:
dsr03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
110189216
Messenger RNA biogenesis [BR:
dsr03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Pre-mRNA cleavage factor IIm (CFIIm)
110189216
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
CID
Pcf11_helical
Pcf11_C
zf_PCFS4
Pfc11_Clp1_ID
Motif
Other DBs
NCBI-GeneID:
110189216
NCBI-ProteinID:
XP_020814847
LinkDB
All DBs
Position
Unknown
AA seq
1969 aa
AA seq
DB search
MEQLFQNYREDERRIGEEYLSSLQDLNCNSKPLINMLTMLAEENISYAPVIVRVVEYYIS
QVAPEFKLPILYLIDSIIKNVKSSYVQLFGQCIVNIFLNAFESVQNSQSQVLEKVRERMY
ALRQTWNEVFPQXKMYALDMKVKRLDNNWPITAKQPAANKIHVNPAIHVNPDFLKTGMVP
VMPVNTTXASDMEEILQAKTRELLELKKRKLELELEQTKKHLEEQERQLNDTIAPMVMPG
PTTSAIPPPIVDPAATGAMRHQRPPPPMGMMPNMPVASQQFPAKPKVNPVNPALLNSVRP
RDPRLARQMQAQSSSQSVAPVHTDPRLKAKTSSNSQKSSRSRSKSPVRNNSSRSDKSNHS
SSSNRKRSESKSSTASSSSSGTDVRHKNGSRSAQSPAKRSGKSSKDRSDPYARNGSPTKR
KSSSPGASPSKSKRNTSQKTSSSSSRGKSSSGRSRSRSPVFMDIDLRRSKSPQPKAAVLV
SLPQVTTSSSSSAAAKAPNDLEKRPTPPAPPSPPIIDVSSLDTDRQRPKTPPPPFFDPTD
SLDTKANKKSSSSSSSSSSSTTILASNASASSSSSSSTSSSTSKLPAKVSFKIQKQFNKL
EKSTANLSTAASLLNPTTSAATATSSSSPPVVPAASSSSSQGNVSDALQQSINKLLLVQG
VPNPVGQKRPADPVPLGTEEEELSQAQKRSKSAKLDALFGSEDVDLRRENPAVKPGVIVV
EDDSMDDCDLSETTMKSTSQPKKATLEELRAKLAKSARQQSKSGKLDNKSKEQGVSQRIK
QLAELKANDDSQEAHDEKMRTILSQAQEMYENHSMNQEQYKDLVQKVVAINESSKNKADR
RRDDDLDLDRNAARDAVLRKRIPKLKGNENHSSGSPRSDGSPRYEEQPAAAVPEKPSNKR
DKAKRELKRRKPTKWGDQVDPVAAQRAAWQMANNNNNNNKRGGGMGVGMQMPIPNQPNFR
GMPWQQPPPAMVMAQSIVPPPPQPPSMIGLPPVPPVQISKAINSLDNPMADVVRSITIDG
GSKEIRFYNQVAIIFMAGDEPHEIGFQQGQRVILIDHNEPLPLSFNDDYKPFQLDGQLHR
IRFGFPSRELYIDDHWYEIYFGGPAVSVPIGNKLHVLKAEGPPPNVDIGRVRRDLVVGKI
NMIVDAHTIVPLFLDARQQTFQLGAEQHSLQFVDSFQYALVDGQLQKIEYGGLPKSMMLN
GGRNCFIRFGTLPKGVVAGKTHVADMVYIKTEAPAEPPQPPPVIVKPPPVVEQPLAAAPA
PALSLPAAAAALGSLNINDLFQKLVSSGIIGGAAPVAAGPTSTESSGTKEATPSAPEATT
STTASATVASSAAAVPAGPPMEPIKRIDLRKPETIKTRQAAVVATLYIGMQCSSCGVRFP
PEQTIKYSQHLDWHFRQNRRDRDSTRKATSRRWFYDLNDWRQYEEIEDVEEREKNFMEAQ
GQPGGPEAFDELSQQRSLDSPVPTCAAGADDVDRCCDMCHEKFEQFYNEELEEWHLRSAI
RVEDKIYHPLCYEDYKAALNPPAEVKSDNDVDMKNSDDNAMDTLIKLEVNDDEDDVPKAS
QTFLDDDDDDVIVLPNEEPSVTEIVDDDDEEEYVPGNVTRAEMGNESSQDKTESNSETKE
PKERAAEQGQQQPHSESANESDVEIQEPNIPFTDLDTYVEKEMDEATKEALLNVKIKEEP
KDDYEEDEDDGFEDVGTVVTLLPLPEDEISIHSSETQTHTIGSSASPATIERPASVTSLS
LPANEADLDLEPADTSAATETELNGEPQESTHNLSSVGPALPLASIVNKIKINITKNTSS
NSHNSASTAATSIIDAADSQGSAISVIGGSSGAGGATGSGDPXTQVNTIQTISTIPVLCG
GNTFVPKIATSTPAMVSSISVIGSSYGASGSSSSNNGSSSSRSNSSGASATQALTEAVGQ
KSATPPPPTVVEPEPEPVVELKPALQNVTLKRTKKVQNGVETSGLCSIM
NT seq
5910 nt
NT seq
+upstream
nt +downstream
nt
atggagcagttatttcagaactatcgcgaggatgagcggcggatcggcgaggagtatctg
tccagtttgcaggatctgaactgcaacagcaagccactcatcaatatgctcacgatgctc
gccgaggagaacatcagctatgctcccgtcatagtccgcgtggtggagtactacatcagc
caggtggcgcccgagtttaaattgcccatactatatttaattgattcgataataaagaat
gtgaaaagcagctacgtccagttgtttgggcaatgcatagtcaacatattcctcaacgcc
tttgagtcggtgcaaaactcacagtcgcaagtcctggaaaaggtacgcgaacgtatgtat
gccctgcgacagacctggaacgaggtattcccacaantcaaaatgtatgccttggatatg
aaggtcaaacgattggataataattggccaattaccgccaaacagccagcagccaacaag
atccatgttaatccagccattcacgttaatccagactttttaaagacgggcatggttcct
gtgatgcccgttaacaccacantggccagcgatatggaagagattctgcaggccaaaaca
cgcgagctactggagcttaaaaagcgcaaactagagcttgagctcgagcaaaccaagaag
catttagaggagcaagaacgtcagcttaacgatacgatagctccaatggtcatgccaggg
ccaacgacatctgccatacccccgcccattgtggatcccgccgctacgggtgccatgcgt
catcaacggccgccacccccaatgggtatgatgcccaatatgccagtggcctcacagcag
tttccggccaagccaaaagtaaatccagtcaatccagccttgctcaactctgtgcgcccc
cgagatccgcgactggcgcgacagatgcaggctcaatcctcatcgcagtcggtcgcaccc
gtacacactgatcctcgcctgaaggccaagacctcatcgaactcacagaaatctagtcgc
tcgcgtagcaagtcacctgtgcgaaataacagcagtcgttctgacaagagcaaccatagc
agctcgtccaaccgcaagcgaagcgagtccaaaagctccacagcctcttcatcctcgtcg
ggcaccgatgtgcggcataaaaatggcagcaggtcagctcaatcaccggcaaagcgatcc
ggaaagagctccaaagatcgctcagatccctatgctcgcaacggatcgcccacgaagcgc
aagagctcctcgccaggcgcttcgccctccaagtccaaacgcaacacatcacagaaaacc
tcctcgtcttcgtcgaggggaaagtcatcatccgggcgatcgcgcagtcgatcaccggtc
ttcatggacattgatctgcgccgcagcaagtcaccacagccaaaggcagcggtactcgtc
tccctacctcaggtgacaacatcatcctcgtcatcagcagcagcaaaagcaccaaatgat
ttagagaaacgccctactcctccagcgcctccaagtccgccgattatagacgtatcgtct
ttggacactgataggcagcggccaaagacgccgccgccccctttcttcgatccaaccgac
agtctcgacacgaaggccaacaaaaagagcagcagcagcagtagtagcagcagcagcagc
acaacaatactagctagtaacgcctccgcgtcttcgtcttcatcttcgtcaacgtcctcg
tccacttccaaattgcccgcaaaagtgtcgttcaaaatacaaaaacagtttaataaatta
gaaaaatctacagcgaatctatcaacagcagcatcactgctaaaccctacgacctcagca
gccactgccacctcatcatcatcaccacctgttgtcccagcagcctcgtcctcgtcatcc
cagggtaacgtatctgacgcgctgcagcagtccatcaataagctgctgctagtgcagggc
gtacccaatcccgttggacagaagcgacccgccgatcccgtacctctggggaccgaagag
gaggagctgtcgcaggcccagaagcgcagcaagtctgccaaactggacgctctctttggc
agcgaggatgtagacctgcgccgcgagaatcccgccgtgaagccaggcgttattgtggtg
gaagacgactctatggatgattgcgatttgagcgagaccacaatgaagtctacttcgcag
ccaaagaaggcaacgctcgaggagctgcgtgccaagttggccaagtcagcgcgccagcag
agcaagtccggcaagttggataacaagagcaaggaacagggcgtatcacagcgcatcaag
caattagctgagttgaaagccaacgatgattcccaggaggcacacgatgaaaagatgcga
acgattctcagccaggcgcaggagatgtacgagaatcacagcatgaatcaggagcagtac
aaggatctagtccagaaagtggtagccatcaacgaaagcagcaagaacaaggccgaccgt
cgacgtgacgatgatcttgacttggatcgcaatgctgccagggatgcagttctacgcaaa
cgcatacccaagcttaagggcaacgagaatcattcgtctggctcgcctcgcagcgacggc
tcgcccagatacgaggaacagccggcagcagcagttccagagaagccctcaaacaagagg
gataaagctaagagggaacttaagagacgcaagcccactaaatggggcgatcaggtggat
cctgtggcagctcaacgtgcggcctggcaaatggctaataataataataacaacaacaag
cgaggaggaggaatgggagtaggcatgcagatgcctatcccgaaccaacctaatttccgt
ggaatgccgtggcagcaacctcctccggccatggtaatggcacagtctatagttccgccg
ccgcctcagccgccgtcgatgattggactgccccccgtgccgcccgtgcaaataagcaag
gccattaattcactggataatcccatggcggacgtcgtgcgtagcatcaccatcgacggt
ggatccaaggagattcgtttctacaaccaggtagccattatctttatggccggcgacgag
ccccacgagatcggcttccagcagggtcagcgagtgattcttatcgaccacaacgagcca
ttgcccctgagcttcaacgacgactacaagcccttccagttggatggccagctgcatcgc
atccgctttgggtttccgtcccgcgagctctacatcgacgatcactggtacgagatctac
ttcggaggtccggccgtctccgtgccgatcggcaacaagctgcacgtcctcaaggccgaa
ggcccgccgcccaacgtcgacattggccgagtgcgccgggatctggtagtcggaaagatc
aatatgatcgtagacgcacatacaattgtgccgcttttcctggacgccagacagcagacc
ttccagctgggcgccgaacagcattcgctgcagttcgtggatagctttcaatatgctctg
gtggacgggcagctgcaaaagatcgagtacggcggccttcccaaaagcatgatgctcaac
gggggtcgcaactgcttcatacgattcggaaccctccccaagggcgttgtggctggcaag
acgcacgtggctgatatggtgtacattaagactgaagctccggccgagccaccccaacct
ccaccggtcattgtgaagccaccacctgtggtggagcaacctttagcggcagcccctgct
cccgctctctcgctgccagcagcggccgctgccttaggcagcttgaacatcaacgacctc
ttccagaagctcgtttcgtcaggaataatcggaggagcggctcctgtggcagcgggacct
acctctacggagtcttcaggcaccaaagaagcgactcctagtgctccggaagccacaact
agcaccacagcgtcagcaactgttgcttcctctgctgctgccgtaccggcgggtccacct
atggaacccatcaaacgtatcgatcttcgcaaacctgaaactatcaagacccgccaggcg
gcggtggtggccacgctttacatcggaatgcagtgcagcagctgcggcgtgcgattccca
cccgagcaaacgatcaagtacagtcagcatttggactggcacttccggcagaacagaagg
gatcgggactcgaccaggaaggctacttcccggcgctggttctacgatctcaacgactgg
cggcaatacgaggagatcgaggatgtggaagagcgcgaaaagaacttcatggaggcgcag
ggtcagccgggtggtcccgaggcatttgacgagctctcccagcaacggtccctggactca
cccgtgcccacgtgtgcggccggagctgatgatgtggatcgctgctgcgacatgtgccac
gagaagttcgagcagttctacaacgaagagctggaggagtggcatctgcgcagcgcaatc
cgtgtggaagataagatctaccatccgctgtgctacgaggactacaaagccgcactgaat
cctcctgccgaggtgaaatccgacaacgatgtagatatgaagaacagtgatgacaatgcc
atggacacgctgatcaaactggaggtaaacgacgatgaagacgatgttccgaaagcttcg
cagacatttttggatgatgacgatgacgatgtaattgtgttgcccaatgaagagcccagc
gtcacagagattgttgatgacgatgatgaggaggaatatgttcccggcaatgtaacaaga
gcggaaatgggcaacgaatcctcccaggacaagacggagtctaattccgagaccaaggag
ccgaaggaaagggccgcggagcagggccagcaacagccccatagtgaatcggccaacgag
tccgatgtggagattcaagagccgaacattcccttcaccgatctggacacgtacgtggaa
aaggaaatggatgaggccaccaaggaggccttgctcaacgttaaaatcaaggaagagccg
aaagacgattatgaggaggacgaggacgatggctttgaagacgtgggcacggtggtgacc
ctactgcctctgcccgaggacgagatctccatccacagcagcgaaactcaaacacatacc
atcggatcgtccgcctcgccggcgaccatagaacgtccagcgtccgttacgtcgctctcg
ctgcctgccaacgaggcggacctggatttggagccggcggatacgtccgcagccacggaa
acggaactgaacggagaaccgcaggagtccacgcataatctgagctcagtgggtccggcg
ttacctttggctagcatagttaataaaataaagataaatatcactaagaatacaagtagt
aatagtcataatagtgcctccaccgccgcaacatcaatcatcgacgcagcggactcgcaa
gggtcagccatcagcgtcattggaggatcatcaggagctggcggagcaaccggatccgga
gatccgnncacacaggtgaacaccattcaaactatttccaccattccagtgctctgcggc
ggcaacacgttcgtgcccaagattgcgaccagcaccccggctatggtcagctcgatctca
gtgattggcagcagttacggcgccagcggcagcagcagcagcaacaatggaagcagcagc
agccggagtaacagttccggcgccagtgcaacacaagctttaacggaggcagttggtcag
aaatcggcaactccaccgccgccaactgttgtggagccggaaccagagcccgtcgtcgag
ctgaagcctgcgttgcagaacgtaacgctcaagcggacgaagaaggtgcaaaacggtgtc
gaaacatccggcctatgctcgatcatgtaa
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integrated database retrieval system
