Demequina sediminis: GCM25873_01970
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Entry
GCM25873_01970 CDS
T09136
Name
(GenBank) DNA-3-methyladenine glycosylase
KO
K13529
AraC family transcriptional regulator, regulatory protein of adaptative response / DNA-3-methyladenine glycosylase II [EC:
3.2.2.21
]
Organism
dss
Demequina sediminis
Pathway
dss03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
dss00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
GCM25873_01970
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
dss03000
]
GCM25873_01970
03400 DNA repair and recombination proteins [BR:
dss03400
]
GCM25873_01970
Enzymes [BR:
dss01000
]
3. Hydrolases
3.2 Glycosylases
3.2.2 Hydrolysing N-glycosyl compounds
3.2.2.21 DNA-3-methyladenine glycosylase II
GCM25873_01970
Transcription factors [BR:
dss03000
]
Prokaryotic type
Helix-turn-helix
AraC family
GCM25873_01970
DNA repair and recombination proteins [BR:
dss03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA glycosylases
GCM25873_01970
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
AlkA_N
Ada_Zn_binding
HTH_18
HTH_AraC
HHH
DUF7437
UBA_6
Motif
Other DBs
NCBI-ProteinID:
BDZ60406
LinkDB
All DBs
Position
complement(186754..188283)
Genome browser
AA seq
509 aa
AA seq
DB search
MPMWDDSMRYAVIRGKDARYDGQFFTAVRTTGIYCRPSCPARTPARANVTFFPSAAAAQR
AGYRSCRRCFPDDTPGSPRWRVGEDVASRAMRLIEDGVVDREGVAGLARRLGYTERHVSR
VLTDQLGAGPLALAVAHRLQHARTLLETTPMPVADVAFAAGFGSVRQFNDAARTSWDLTP
SQVRGRASARGTALAGGAGGAAGEIRLRLRHREPADVPRALAFLGARAIAGVEAWDGEEY
ARTMLLPHGGATVRLRAGAGHVAASLSLADVRDLGAAVARCRRLLDLDADPIAIDATLGE
SAAMAALAAAAPGLRVPGAVDGFEIAVRAIVGQQVSVAGARRTLGTMVERWGGVSVPHGP
REAGSEVLSVPNRVFPGAEALADVDPGVGLMPRSRWSAVSAVARAVLDGSLDLSPGADRA
HTRAALLDLPGIGPWTADYIAMRALGDPDALPFTDLILQRASGLDARGLAHAAESWRPWR
AYGAIHLWTASAEGRLPGSTRATPAARVA
NT seq
1530 nt
NT seq
+upstream
nt +downstream
nt
gtgcctatgtgggacgactcgatgcgctatgcggtgatccgcggcaaggacgcgcgttac
gacggtcagttcttcaccgcggtccgcaccacgggcatctactgccggccgtcgtgtccc
gcgcgcacccccgcgcgcgccaacgtgaccttctttcccagcgccgcggccgcgcagcgc
gcgggttaccgctcgtgccgccgatgcttccccgacgacacccccggctccccgcggtgg
cgcgtgggcgaggacgtcgcgagccgcgcgatgcgtctcatcgaggacggggtcgtggat
cgcgagggtgtcgccgggctcgcgcggcggctgggctacaccgagcgccacgtgtctcgc
gtcctcacggatcagctgggcgccggcccgctggccctcgcggtcgctcaccgcctgcag
cacgcccgcaccctgctcgagaccaccccgatgcccgtcgcggacgtcgccttcgccgcc
ggctttgggtcggtgcgccagttcaatgatgccgcgcgcacctcatgggatctcacgccg
tcccaggtgcgcggtcgcgcgagcgcccgcggcaccgcactggccgggggcgccgggggc
gccgcgggcgagattcgcctgcgcctgcgtcaccgcgagcccgccgacgtcccgcgcgca
ctggcattcctgggggcgcgcgcgatcgcgggcgtcgaggcgtgggacggagaggagtat
gcgcggacgatgctcctgccgcacggcggcgcgacggtgcgcctgcgcgcgggcgcgggg
catgtcgcggcaagcctgtcgctcgccgacgtgcgcgacctgggcgcggcggtggcacgg
tgcaggaggctgctcgatctcgacgcggatccgatcgcgatcgacgcgacgctcggcgag
tctgcggcaatggctgccctcgcggctgccgcaccggggctacgcgtgcccggcgccgtc
gacggattcgagatcgcagtgcgtgcgatcgtgggccagcaggtgagcgtcgcgggggcg
cggaggacgcttgggacgatggtcgagcggtggggaggagtgagcgtcccccatggcccc
agggaggccggatcggaagtcctgagcgtcccgaaccgggtcttccctggcgcggaggcg
ctcgcggacgtcgatcccggagtggggctcatgccacgctcgcgctggagtgccgtgtcc
gccgtcgcgcgcgcggtgctcgacggttcgctcgacctctcccccggcgcggaccgcgcc
cacacccgcgccgcgttgctcgacctgccgggcatcgggccgtggaccgcggactacatc
gcgatgcgcgccctcggcgatcccgatgccctaccgttcacggacctcatccttcagcgc
gcgagcggtctcgacgcgcgcggactcgcccacgcggcggagtcctggcggccatggcgt
gcgtacggcgcgatccacctgtggaccgcgagcgcggaggggcgtctgcctggttcgacg
cgcgcgacaccggccgcccgcgtagcctga
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