Demequina sediminis: GCM25873_08650
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Entry
GCM25873_08650 CDS
T09136
Symbol
deaD
Name
(GenBank) ATP-dependent RNA helicase DeaD
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
dss
Demequina sediminis
Pathway
dss03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
dss00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
GCM25873_08650 (deaD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
dss03019
]
GCM25873_08650 (deaD)
03009 Ribosome biogenesis [BR:
dss03009
]
GCM25873_08650 (deaD)
Enzymes [BR:
dss01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
GCM25873_08650 (deaD)
Messenger RNA biogenesis [BR:
dss03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
GCM25873_08650 (deaD)
Ribosome biogenesis [BR:
dss03009
]
Prokaryotic type
rRNA helicases
GCM25873_08650 (deaD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
CMS1
UvrA_inter
adh_short
P-loop_SecA
Motif
Other DBs
NCBI-ProteinID:
BDZ61074
LinkDB
All DBs
Position
808686..810620
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AA seq
644 aa
AA seq
DB search
MGTFGPHACETRPCRGAYCWTMSSPSTPSSTPSDPDAAASGPTFAELGLGEHVLKAIRAV
GYETPSAIQAATIPPLLAGRDVVGLAQTGTGKTAAFALPILDRLERGRKKPQALVLAPTR
ELALQVCEAFEQYAGHSTGVHILPVYGGQGYGVQLSALRRGVDVVVGTPGRIMDHLDKGT
LDLSELTYLVLDEADEMLKMGFAEDVETILASTPEDKQVALFSATMPAQIRRLSQRYLRD
PQEITVKRQTTTSSTITQRYLVVAYQQKLDALTRILEVENFEAMIVFTRTKNETETVAEK
LRARGYAAAAINGDVVQAQRERTIAQLKDGKLDVLVATDVAARGLDVERISHVVNYDLPV
DTESYVHRVGRTGRAGRTGDAISFVTPRERRMLGAIEKATRQPLTLMQLPTAGDVNATRL
ARFDDSITAALAQRDRIDRFRDIVAHYVEHHDVPEGDVAAALAVVAQGDTPLLLDPENDA
PPTEFAAPRKARGDFRDDRDDRPARRDRGSGDRVTYRIAVGRRQKVEPRQIVGAIANEGG
LDRSDFGQITIRPDFSLVELPANLPADVLDRLRRTRISGQLIELQVDRGPGGSRSGGPRS
SGPRSSDQRGGGSRYGSDRGSDRGGDRGSDRYDDAKPYRKPRTR
NT seq
1935 nt
NT seq
+upstream
nt +downstream
nt
atggggacctttgggccccacgcctgcgagacgcgcccgtgccggggggcctactgttgg
accatgtcttctcccagcacgccctcttccaccccctcggaccccgacgcggcagcgtcc
ggcccgaccttcgcggagctggggctcggcgagcacgtgctcaaggcgattcgcgcggtc
ggctacgagacgccgtccgcgatccaggccgccaccattcccccgctgctcgcgggccgc
gacgtggtcgggctcgcgcagaccggtaccggaaagacggcggcgttcgcgctgccgatc
ctcgaccgcctcgagcgcggccgcaagaagccccaggcgctggtcctcgcgcccactcgc
gagctcgcgctccaggtctgtgaggccttcgagcagtacgccggccacagcaccggagtc
cacatcctgccggtctacggcggtcagggctatggcgtccagctgtcggcactgcgccgc
ggcgtcgacgtcgtggtgggcacccccggtcgcatcatggaccacctcgacaagggcacg
ctcgacctgtccgaactcacgtacctggtgctcgacgaggccgacgagatgctcaagatg
ggcttcgccgaggacgtcgagaccatcctcgcctcgacccccgaggacaagcaggttgcg
ctgttctccgcgaccatgcccgcccagatccgtcgcctgtcccagcgctacctgcgcgac
ccgcaggagatcacggtcaagcgccagacgacgacctcctcgaccatcacgcagcgctac
ctggtcgtggcgtatcagcagaagctcgatgccctcacgcgcatcctcgaggtcgagaac
ttcgaggcgatgatcgtgttcacgcgcaccaagaacgagaccgagacggtcgccgagaag
ctgcgcgcgcgcggatacgccgccgccgccattaacggcgacgtagtgcaggcccagcgc
gagcgcacgatcgcccagctcaaggacggcaagctggacgtgttggtcgccaccgacgtc
gcggcccgcggcctcgatgtcgagcgcatcagccacgtcgtgaactacgaccttcccgtc
gacaccgagtcctacgtgcaccgcgtggggcgcacgggacgcgcgggacgcacgggagac
gcgatcagctttgtcaccccgcgcgagcgccgcatgctgggcgcgatcgagaaggcgacg
cggcagccgctgacgctcatgcagttgcccaccgcgggcgacgtcaacgcgacccgcctc
gcgcgcttcgatgactcgatcacggcggcgctggcacagcgcgacaggatcgatcgcttc
agggacatcgtcgcccactacgtcgagcaccacgacgtccccgagggggacgtggccgcc
gcgctcgccgtggtcgcgcagggtgacactcccctgctgctcgacccggagaacgatgcc
ccgcccaccgagtttgccgcgccccgcaaggcgcggggagacttccgcgacgaccgtgac
gaccgcccggcacgccgcgaccgcggctcgggtgaccgcgtcacctaccgcatcgcggtg
gggcggcgtcagaaggtcgagccgcgccagatcgtgggcgcgatcgccaacgagggcggc
ctggaccgctccgacttcggccagatcaccatccgcccggacttctcactggtcgagctt
cccgcgaatctgcccgccgatgtcctcgaccgcctgcgccgcacgcgcatcagcggccag
ctcatcgagctgcaggtggatcgcgggcccggcggctcgcgatcgggcggtccgcgctcg
tccggtccgcgttcgtccgaccagcgcggtggcggctcccgttacggcagcgaccgcggt
tctgaccgcggcggcgaccggggttccgatcgctacgacgacgcgaagccgtaccgcaag
ccgcgcacgcgctaa
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