Demequina sediminis: GCM25873_11340
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Entry
GCM25873_11340 CDS
T09136
Symbol
hrpA
Name
(GenBank) ATP-dependent helicase
KO
K03578
ATP-dependent RNA helicase HrpA [EC:
5.6.2.6
]
Organism
dss
Demequina sediminis
Brite
KEGG Orthology (KO) [BR:
dss00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
dss03019
]
GCM25873_11340 (hrpA)
Enzymes [BR:
dss01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
GCM25873_11340 (hrpA)
Messenger RNA biogenesis [BR:
dss03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
GCM25873_11340 (hrpA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DUF3418
OB_NTP_bind
Helicase_C
HA2_C
DEAD
AAA_19
AAA_22
nSTAND3
NACHT
HA2_N
T2SSE
PhoH
Gal-3-0_sulfotr
TsaE
Motif
Other DBs
NCBI-ProteinID:
BDZ61343
LinkDB
All DBs
Position
1060450..1064718
Genome browser
AA seq
1422 aa
AA seq
DB search
MSDESLPARGPRRGVGGGAGAGAGGGNRRAANGRRGTQPRHRPRVNPRALERAAAARAAV
ELPPLTYPPELPVSARREDIAAAIRDHQVVIVAGETGSGKTTQIPKICLDLGRGRAGQIG
HTQPRRIAARAVAERVAEEIGTPLGETVGFQVRFTDTSSESTLVKVMTDGILLAQIQRDP
ELLAYDTLIIDEAHERSLNIDFLLGYLTNLLPRRPDLKVIITSATIDSERFAAHFRPGGR
DAGDDAPLAPVVEVTGRTYPVEVRYRPLEGEDKGDERDLMTGIVDACTELMTEGDGDILV
FLSGEREIHDAADALEAHLGDRARDPRHPRRVEILPLFSRLSAAEQHRVFERHTARRIVL
ATNVAETSLTVPGIHYVVDPGTARVSRYSKATKVQRLPIEPISQASARQRSGRAGRLADG
IAIRLYSEDDFEARPAFTEPEILRTSLASVLLQMISVGVASSPDEVARFPFVEPPDTRAI
RDGVQLLTELGAIAVREGSAGPSTTVLTETGRMLARLPMDPRQARMIVEGSRRGVAREVA
VIAAALSIQDPRERPTERRDEADLLHRRFADPGSDLLAYLNLWEHVRERQHALSGNQFRR
MCKAEHLNFLRVREWQDLVQQIREAAKGLGIEMPYRAPSPVEDPEGSGALRHLWNEDAIH
RSVLAGLLSQIGAQDVLQLKASSFSHLKGEARAKEMRRARKRASNEFIGARGIRFAINPG
SPLSKKPPEFVMAAELVETSRLWARDVARIDPAWAEELAGDLAKRTYSEPHWSTKRGAAM
ATEKVLLYGVPIVAERPVLWAKVNPEEARDLFIRHALVGGEWTTHHHFWRDNQRVLEEAA
EIEARSRTRGVIADDETLFAFYDARLPSGIVSARHFDRWWKDARRDTPQLLTLTLEELVP
ESAAVDASAFPDAWPQLDLELPLTYQFEPGTDADGVTVHIPLGVLPRVVPEGFDWLVPGL
LPELVLATIRALPKAVRRLLVPAPDAAREIVAWLSAHTPAWADVVRAGDMAEPFRVAFAR
AVRDLRGVDIPADAWDGLDERLPAHLRMSFRAVEVQGGRERVRGEERTLEALQRALAPQA
QDAVRTAVHRAAEAASRPRAGADARAGSRAPLAAPTAPTARPTSAAVAEVDALATWPDMD
VLPTEVEGTVHGVVARGYPALVEERAGGVARAALRVLATATDARALHARGVRRLLLTELA
LPVKRVTTRWSPAESLALGASPYRTTEALVDDLQLAAVAVLTPAAASVRDRAAYESLRAD
VRARLEDEVLATARLAAAALAAARDLDSRVRAATSMSLLATLQDLREQSAALVGEGFIAA
TPPDRLRHLPRYLAAAMRRLEKAQADPSRDAQLAWQVGQAVEAYEAVRDARAAGRPDPEV
SASLEAVRWMIEELRVSLFAQQLGTDGPVSEQRVRKALAALG
NT seq
4269 nt
NT seq
+upstream
nt +downstream
nt
gtgagtgacgagtccctgcccgcgcgcggcccccgccggggtgtcggcggcggcgcgggc
gccggcgccggaggcggcaaccgccgcgccgccaacggtcgccgcgggacccagccccgg
catcgtccccgcgtcaatccccgcgcgctcgagcgtgccgccgcggcgcgcgcggccgtc
gagttgcccccactcacctatccgcccgagctgcccgtctcggcgcggcgcgaggacatc
gccgccgcgattcgcgaccaccaggtggtcatcgtcgcgggcgagaccggctcgggaaag
accacgcagatccccaagatctgtctcgacctgggacgcggtcgtgccgggcagatcggc
cacacccagccgcgcaggattgccgcgcgcgcggtcgcggagcgtgtcgcggaggagatc
ggcacgcccctgggtgagacggtcggctttcaggtgcgcttcaccgacacctcgagcgaa
agcaccctcgtcaaggtcatgacggacggcatcctgctcgcgcagattcagcgcgacccc
gagctgctggcctacgacacgctcatcatcgacgaggcgcacgagcgcagcctcaacatc
gactttctgctgggctacctcaccaacctgctgccgcgacgccccgacctcaaggtcatc
atcacgtcagcgaccatcgactcggagcgcttcgccgcgcacttccggccgggtggcagg
gacgcgggggacgatgccccgctcgcgccggtggtcgaggtcaccggccgcacctacccg
gtcgaggtccgctaccgcccgctcgagggcgaggacaagggcgacgagcgcgacctcatg
acgggcatcgtcgacgcgtgcaccgagctcatgaccgagggggacggcgacatcctcgtg
ttcctgtcgggggaacgcgagatccacgacgccgccgacgccctcgaggctcacctgggc
gaccgcgcccgcgacccccgccacccgcggcgcgtcgagatcctgccgctgttctcacga
ctgtcggcggccgagcaacaccgcgtcttcgagcggcacaccgcgcgcaggatcgtgctc
gcgaccaacgtcgcggagacctcgctcaccgtgccgggcatccactacgtggtcgacccc
ggcaccgcgcgcgtgtcgcgctactcgaaggcgaccaaggtccagcgcctcccgatcgaa
cccatctctcaggccagcgcgcgccagcgctcgggccgcgcgggacgactcgcggacggc
atcgcgatccggctgtactccgaggacgacttcgaggcgcggccggccttcaccgagccc
gagatcctgaggacgtcgctcgcgagcgtgctgctgcagatgatctcggttggagtcgcc
tcgtctcccgacgaggtggcgcggttcccgtttgtcgagccgcccgacacgcgcgcgatc
cgcgacggcgtgcagctgctcaccgagctcggggcgatcgcggtccgcgagggctccgcc
gggccctcgaccaccgtactcaccgagaccggacgcatgctcgcgcgacttcccatggat
ccgcgccaggcacgcatgatcgtcgagggctcgaggcgcggtgtcgcgcgcgaggtcgcg
gtcatcgcggccgcgctgagcatccaggacccgcgcgagcgcccgaccgagcgccgcgac
gaggccgacctcctccaccgccgcttcgcggatcccggttccgacctgctcgcgtacctc
aacctgtgggagcacgtgcgcgagcgccagcacgcgctctcgggcaaccagttccgccgc
atgtgcaaggcagaacacctcaacttcctgcgcgtgcgggagtggcaggacctggtccaa
cagatcagggaggccgccaaggggctcggcatcgagatgccgtatcgcgcaccctccccc
gtcgaggaccccgagggctccggcgcgctgcgccatctgtggaacgaggacgcgatccac
cgcagcgtgctcgcgggcctgctgtcgcagatcggggcgcaggacgtcctccagctcaag
gcgtcgagcttctcgcacctcaagggcgaggcgcgcgccaaggagatgcggcgcgcacgc
aagcgcgcctcgaacgagttcatcggcgcgcgcgggatccgcttcgcgatcaacccgggt
tcgccgctgtcgaagaagccacccgagttcgtgatggcggccgagctggtcgagaccagc
aggctgtgggcgcgcgacgtcgcgcggatcgaccccgcgtgggcagaggagctcgcgggc
gaccttgccaagcgcacctattccgagccgcactggagcaccaagcgtggcgccgcgatg
gcgaccgagaaggtgctgctgtacggcgtgccgatcgtcgccgagcgacccgtgctgtgg
gccaaggtcaaccccgaggaggcgcgcgacctgttcatccgccacgcgctcgtcggcggc
gaatggaccacgcaccaccacttctggcgcgacaaccagcgcgtgctcgaggaggcggcc
gagatcgaggcgcgttcgcgcacgcgcggcgtcatcgccgacgacgagacgctgttcgcg
ttctacgacgcccgcctcccctcaggaatcgtgtcggcgcgccacttcgaccgctggtgg
aaggacgccaggcgcgacactccgcaactgctgacgctcacgctcgaggaactggtaccc
gagagcgcggccgtcgacgcatcggccttccccgacgcctggccgcagctggacctcgag
ctgccgctcacctaccagttcgagcccggcaccgatgccgacggcgtgacggtccacatc
ccgttgggggtcctgccgcgcgtcgttcccgagggcttcgactggctggtccccggcctg
ctgcccgagctcgtgctcgccacgatccgcgcgctgcccaaggccgtcaggcggctgctc
gtgccggcgccggacgccgcgagggagatcgtcgcgtggctctcggcacacactcccgcg
tgggcggacgtggtgcgggcgggcgacatggccgagccgttccgcgtcgccttcgcgcgc
gcggtgcgtgacctgcgcggcgtcgacatccccgcggacgcgtgggacgggctcgacgag
cgtctgcccgcacacctgcgcatgtccttccgcgccgtcgaggtgcagggcgggcgcgag
cgcgtgcgcggagaggagcgcacgctcgaggcgctgcagcgcgccctcgcgccacaggct
caggatgcggtgcgcaccgcggtgcatcgcgccgccgaggccgcgtcgcgtccgcgagcg
ggcgccgatgcccgagccgggtcccgcgcgccgctcgccgcgccgactgcgccgaccgcg
cggcccacgagtgccgcggtggccgaggtcgacgcactcgccacgtggcccgacatggac
gtgctgcccaccgaggtcgaggggaccgtgcacggagtggtggcccgcggctaccccgca
ctggtcgaggagcgcgccggaggcgtggcccgcgccgcactccgcgtgctcgcgacggcc
acggacgcgcgggcgctccacgccaggggcgtgcgccgcctgctgctcaccgaactcgcg
ctgcccgtcaagcgcgtcacgacgcgctggtcccccgccgagtcgctcgcgctgggtgcg
tcgccctaccgcaccaccgaggcgctcgtggacgacctccagctcgccgccgtcgcggtc
ctcacgccggccgcggcgagcgtgcgcgaccgcgcggcgtacgaatcgcttcgcgccgac
gtgcgcgcgcgcctcgaggacgaggtgctcgcgaccgctcgcctcgccgcggcggctctc
gcggcagctcgcgacctcgactcgcgggtgcgcgccgccacctcgatgtcgctgctcgcg
accctccaggacctgcgcgagcagtccgccgcgcttgtcggcgagggcttcatcgccgcc
accccgcccgaccgcctgcgacacctgccgcgctacctcgcggcagcgatgcgccgcctt
gagaaggcccaggccgatccctcgcgcgacgcgcagctcgcgtggcaggtgggccaggcc
gtcgaggcctacgaggcggtcagggacgcgcgcgccgccggccgcccggatcccgaggtc
tccgcgtccctcgaggcggtgcgctggatgatcgaggagctcagggtgtcgctgttcgcc
cagcagctcggcaccgacggccccgtgagcgagcagcgcgtgcgcaaggcgctcgccgca
ctcggctag
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