KEGG   Demequina sediminis: GCM25873_11900
Entry
GCM25873_11900    CDS       T09136                                 
Symbol
rnj
Name
(GenBank) ribonuclease J
  KO
K12574  ribonuclease J [EC:3.1.-.-]
Organism
dss  Demequina sediminis
Pathway
dss03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:dss00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    GCM25873_11900 (rnj)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:dss03019]
    GCM25873_11900 (rnj)
Messenger RNA biogenesis [BR:dss03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   RNA degradosome components
    Ribonucreases
     GCM25873_11900 (rnj)
SSDB
Motif
Pfam: RNase_J_b_CASP RNase_J_C Lactamase_B RMMBL Lactamase_B_2 Lactamase_B_6
Other DBs
NCBI-ProteinID: BDZ61399
LinkDB
Position
complement(1118883..1120565)
AA seq 560 aa
MTFNPDLLPPPALEPGTLRVVPLGGLGEVGRNMHVLEIDGRLLIIDCGVLFPEDHQPGVD
LILPDFGYIEDRLDDVEAIVLTHGHEDHIGAVPYLLRMRRDIPILGSQLTLAFIEAKLKE
HRITPVTLAVKEGQREVLGKFDLEFVAVNHSIPDALAVFVRTPAGTVLNTGDFKMDQLPL
DGRITDLRAFARMGAEGVDLFMVDSTNAEVPGFTTSEVEIGPVLDRQFAQATGRIVVASF
ASHVHRVQQVIDAAQAHGRKVAFVGRSMVRNMGIAADMGFLRVPDGILVDPKKADDMPGH
QVVYMSTGSQGEPMAALSRMATGDHKVTVGEGDLVILASSLIPGNENAVYRVINGLMRLG
ATVVHQGSARVHVSGHASAGELLYCYNILRPRNVMPIHGEVRHLLANGNLAIKTGVPHER
VMFAENGTVVDLKDGVATVVGAVEVHNVYVDGSSVGEITDTELKDRRILAEEGFVTIIAV
VDSTNGRVVSGPEVHARGLAEDDSVFDAILPDIKRAIEDAAKGGSTDTHQLQQVARRVLG
RFVGTKLRRRPMIIPVVVEA
NT seq 1683 nt   +upstreamnt  +downstreamnt
atgaccttcaaccccgacctgcttccccctcccgccctcgaacccggcacgctgcgcgtg
gtgccgctcggcggcctgggcgaggtggggcgcaacatgcacgtcctcgagatcgacgga
cggctgctcatcatcgactgtggcgtgctcttccctgaagaccaccagcccggcgtcgac
ctcatccttcccgacttcgggtacatcgaggaccggctcgacgatgtcgaggcgatcgtc
ctcacgcacggccacgaggaccacatcggtgccgttccgtacctgctgcgcatgcgcagg
gacatcccgatcctgggctcccaactgacgctcgccttcatcgaggccaagctcaaggag
caccgcatcacgcccgtcacgctcgccgtcaaggagggccagcgcgaggtgctcgggaaa
ttcgacctcgagttcgtcgccgtcaaccactcgattccggatgccctcgcggtcttcgtg
cgcacccccgcaggcaccgtgctcaacaccggcgacttcaagatggaccagctgccgctc
gacggccgcatcaccgacctgcgcgccttcgcgcgcatgggtgccgagggcgtcgacctg
ttcatggtcgactcgaccaatgccgaggtgcccggattcaccacctccgaggtggagatc
ggccccgtgctcgaccgccagttcgcgcaggcgacgggccgcatcgtggtggcgtccttc
gcgagccacgtgcaccgcgtccagcaggtgatcgacgctgcgcaggcgcacggccgcaag
gtggccttcgtgggccggtcgatggtgcgcaacatgggcatcgccgcggacatgggcttc
ctgcgcgtgcctgacggcatcctcgtcgacccgaagaaggcggacgacatgccgggccac
caggtggtctacatgtcgaccggatcccagggcgagccgatggcggcgctgagccgaatg
gccaccggcgaccacaaggtcacggtgggcgagggcgacctggtgatcctcgcatcgtcc
ctcatccccggcaacgagaacgccgtgtaccgcgtcatcaacgggctcatgcgcctgggc
gcgaccgtggtgcaccagggcagcgcgcgcgtgcacgtctcgggccacgcgagtgcgggc
gagctgctgtactgctacaacatcctgcgcccgcgcaacgtcatgccgatccacggcgag
gtgcgccacctgctcgcgaacggcaatctcgcgatcaagacgggcgtgccgcacgagcgc
gtgatgttcgcggagaacggcaccgtcgtggacctcaaggacggcgtcgcgaccgtcgtg
ggcgcggtcgaggtgcacaacgtctacgtcgacggatcgtcggtgggcgagatcaccgac
accgagctcaaggaccgccgcatcctcgcggaggagggcttcgtcacaatcatcgccgtg
gtcgactcgaccaacggccgcgtcgtgagcggcccggaggtgcatgcgcgcggcctcgcc
gaggacgactcggtgttcgacgcgatcctgcccgacatcaagagggcgatcgaggacgcg
gcgaagggcggttcgacggacacccaccagctccagcaggtggcgcgccgcgtcctggga
cggttcgtgggcaccaagctccgccgccgcccgatgatcatcccggtggtcgtcgaggcc
tga

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