Demequina sediminis: GCM25873_12140
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Entry
GCM25873_12140 CDS
T09136
Symbol
truB
Name
(GenBank) tRNA pseudouridine synthase B
KO
K03177
tRNA pseudouridine55 synthase [EC:
5.4.99.25
]
Organism
dss
Demequina sediminis
Brite
KEGG Orthology (KO) [BR:
dss00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
dss03016
]
GCM25873_12140 (truB)
Enzymes [BR:
dss01000
]
5. Isomerases
5.4 Intramolecular transferases
5.4.99 Transferring other groups
5.4.99.25 tRNA pseudouridine55 synthase
GCM25873_12140 (truB)
Transfer RNA biogenesis [BR:
dss03016
]
Eukaryotic type
tRNA modification factors
Psudouridine synthases
GCM25873_12140 (truB)
Prokaryotic type
GCM25873_12140 (truB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TruB_N
TruB_C_2
TruB_C
DKCLD
Motif
Other DBs
NCBI-ProteinID:
BDZ61423
LinkDB
All DBs
Position
complement(1137932..1138870)
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AA seq
312 aa
AA seq
DB search
MGRRGPEPAPGIVVIDKPQGWTSHDVVARVRRLAQTSKVGHAGTLDPMATGVLVVGIGRA
TRLLTYIVGHDKSYDATIRLGEATVTDDAEGEVTSRADASVVTDDALARGVAALTGDILQ
RPSAVSAIKIDGKRAYARVRGGEEVELPERPVTVSRFEVVDVRRAGGVVDVDVRVDVSSG
TYVRALARDLGAGLGVGGHLTALRRTRVGGLDLSRARTLEELGALVEAGETLPRVSLAEA
AAATLPVLEVSDDDARALGYGQFIDAIVDGPTVAIAHGPRAIAVIEPKGPRAKPTVVFEP
AAASSAPDGAAQ
NT seq
939 nt
NT seq
+upstream
nt +downstream
nt
gtgggacggcggggccccgagcccgcgcccggaatcgtcgtcatcgacaagcctcagggc
tggacgtcgcatgacgtggtcgcgcgcgtgcgccggctcgcgcagacgtccaaggtgggc
cacgccggcacgctcgatcccatggccacgggggttctcgtggtggggatcgggcgtgcg
acgcgcctgctcacgtacatcgtgggccacgacaagtcctacgacgcgaccattcgcctg
ggcgaggcgaccgtcacggatgacgcggagggcgaggtcacctcgcgcgccgatgcctcg
gtggtgacggacgatgccctggcgcggggcgtcgcggccctcaccggcgacatcctgcag
cgtccgagcgcggtgagcgcgatcaagatcgacggcaagcgcgcgtacgcgcgcgtgcgc
ggcggcgaggaggtcgagctccccgagcggccggtgacggtgtcacgcttcgaggtggtc
gacgtgcgtcgcgcgggaggggtggtcgacgtcgacgtgcgcgtcgacgtgtcgtcgggc
acgtatgtgcgcgccctcgcgcgcgacctgggcgcggggctcggcgtcgggggacacctc
acggccctgcgccgcacgcgcgtgggcgggctcgacctgtcgcgggcccgcacgctcgag
gagttgggcgcgctggtcgaggcgggggagacgctgcctcgtgtgagccttgccgaggcc
gccgccgcgaccctgccggtgctcgaggtctccgacgacgacgcacgggcgctcggttac
gggcagttcatcgacgcgatcgtcgacggcccgaccgtcgcgatcgcgcacgggccgcgc
gcgatcgcggtgatcgaacccaaggggccgcgcgcgaagcccacggtcgtcttcgagccg
gccgcggcatcgtccgctcccgacggtgcggcacaatga
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