Demequina sediminis: GCM25873_12630
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Entry
GCM25873_12630 CDS
T09136
Symbol
ffh
Name
(GenBank) signal recognition particle protein
KO
K03106
signal recognition particle subunit SRP54 [EC:
3.6.5.4
]
Organism
dss
Demequina sediminis
Pathway
dss02024
Quorum sensing
dss03060
Protein export
dss03070
Bacterial secretion system
Brite
KEGG Orthology (KO) [BR:
dss00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03060 Protein export
GCM25873_12630 (ffh)
09130 Environmental Information Processing
09131 Membrane transport
03070 Bacterial secretion system
GCM25873_12630 (ffh)
09140 Cellular Processes
09145 Cellular community - prokaryotes
02024 Quorum sensing
GCM25873_12630 (ffh)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
02044 Secretion system [BR:
dss02044
]
GCM25873_12630 (ffh)
Enzymes [BR:
dss01000
]
3. Hydrolases
3.6 Acting on acid anhydrides
3.6.5 Acting on GTP to facilitate cellular and subcellular movement
3.6.5.4 signal-recognition-particle GTPase
GCM25873_12630 (ffh)
Secretion system [BR:
dss02044
]
Sec (secretion) system
Prokaryotic Sec-SRP core components
GCM25873_12630 (ffh)
Eukaryotic Sec-SRP protein
GCM25873_12630 (ffh)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SRP54
SRP_SPB
SRP54_N
CbiA
AAA_22
cobW
nSTAND3
APS_kinase
Zeta_toxin
MMR_HSR1
AAA_16
AAA_25
GTP_EFTU
AAA_18
NPHP3_N
AAA_30
ArsA_ATPase
AAA_31
NACHT
Thymidylate_kin
TsaE
MeaB
ABC_tran
AAA_33
MobB
NB-ARC
NTPase_1
AAA_5
ResIII
ATP_bind_1
ParA
AAA_28
6PF2K
AAA
nSTAND_NTPase7
SLFN-g3_helicase
AAA_17
Motif
Other DBs
NCBI-ProteinID:
BDZ61472
LinkDB
All DBs
Position
complement(1178126..1179721)
Genome browser
AA seq
531 aa
AA seq
DB search
MFANLSDRLTETFRNLRGKGRLTEADIDGTIREIRRALLDADVAVPVVRTFTSNIRERAL
GAEVSGALNPGQQVVKIVNEELVAILGGEARTLRFAKTGPTVIMLAGLQGAGKTTLAGKL
AHHLKQQGHTPLLVAADLQRPNAVTQLRVVGERAGVPVFAPEPGVTREDERPRGNPVKVA
KKGLKEAEQRQHSVVIVDTAGRLGIDQELMSQAADIRKAVEPDEVLFVIDAMIGQDAVTT
ATAFQQGVDFTGVVLTKLDGDARGGAALSVAEVTGRPIMFASTGEKLEDFEVFHPDRMAS
RILDMGDILTLIEQAERTFDQAEAERMAQKVSQGEDFTLADFLSQMQQLKNMGSMKKMLT
MLPGMGQLRDQIENFDERELTRTEAIIQSMTPAERDNPKLLNGSRRSRIAAGSGTTVAQI
NSLVKRFEDAQKMMRAMARGGGMPQLPGMGGGPGAFGGMPGGKKSKGKQAPQRKVKGKSG
NPALRAQQEAAARNRTPAAPAPGSAFGLGAQPPQEVDTSKLGADLGKYLGR
NT seq
1596 nt
NT seq
+upstream
nt +downstream
nt
gtgttcgccaacctctccgatcgcctgacagagaccttccgcaacctgcggggcaagggc
cgcctgaccgaggcggacatcgacggcaccatccgcgagatccgccgcgcgctgctcgac
gccgacgtcgcggtgcccgtggtccgcacgttcacgagcaacatccgcgagcgcgcgctg
ggagccgaggtgtcgggcgcgctcaaccccggccagcaggtcgtgaagatcgtcaacgag
gagctcgtcgcgatcctgggcggcgaggctcggaccctgcggttcgcgaagaccggcccg
acggtcatcatgctcgcgggtctgcagggtgccggaaagacgaccctcgcgggcaagctc
gctcatcacctcaagcagcagggccacaccccgctgctggtcgccgccgacctgcagcgc
cccaacgccgtgacgcagttgcgtgtcgtgggcgagcgcgcgggagtcccggtgttcgcc
cccgagcccggcgtcacccgcgaggacgagcgcccgcgcggcaaccccgtcaaggtcgcg
aagaagggcctcaaggaggccgagcagcgtcagcactcggtcgtgatcgtcgataccgcg
ggccgcctgggcatcgaccaggagctcatgagtcaggccgcggacatccgcaaggccgtc
gagcccgacgaggtcctcttcgtcatcgacgcgatgatcggccaggacgccgtcaccacg
gcgaccgcgttccagcagggcgtcgacttcaccggcgtggtgctgaccaagctcgacggc
gacgcccgcggtggtgcggcgctgtcggtcgccgaggtcacgggccgcccgatcatgttc
gcgtcgaccggagagaagctcgaggacttcgaggtcttccacccggaccgcatggcgtcg
cgcatcctcgacatgggcgacatcctcacgctcatcgagcaggccgagcgcacgttcgac
caggccgaggccgagcgcatggcgcagaaggtctcgcagggcgaggacttcacgctcgcg
gatttcctcagccagatgcagcagctcaagaacatgggctcgatgaagaagatgctcacg
atgctgcccggcatgggccagctgcgtgaccagatcgagaacttcgacgagcgcgagctc
acgcgcaccgaggcgatcatccagtcgatgacgcccgccgagcgcgacaaccccaagctt
ctcaacggctcgcgtcgctcgcgcatcgcggcgggttcagggacgaccgtcgcgcagatc
aactcgctcgtcaagcggttcgaggacgcgcagaagatgatgcgcgcgatggcccgtggc
ggcggcatgccgcagctgcccgggatgggcggcgggcccggggcgttcggcggcatgccg
ggcggcaagaagtcgaagggcaagcaggcgccacagcgcaaggtcaagggaaagtcgggc
aaccccgcgctgcgcgcgcagcaggaggcggcggcccgcaaccgcaccccggccgcgcct
gcgccgggctcagccttcggcctgggcgcgcagccgccccaggaggtcgacacctcgaag
ctgggcgccgacctgggcaagtacctcgggcgctga
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