Demequina sediminis: GCM25873_26180
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Entry
GCM25873_26180 CDS
T09136
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
dss
Demequina sediminis
Pathway
dss03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
dss00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
GCM25873_26180 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
dss03021
]
GCM25873_26180 (rpoC)
03400 DNA repair and recombination proteins [BR:
dss03400
]
GCM25873_26180 (rpoC)
Enzymes [BR:
dss01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
GCM25873_26180 (rpoC)
Transcription machinery [BR:
dss03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
GCM25873_26180 (rpoC)
DNA repair and recombination proteins [BR:
dss03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
GCM25873_26180 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
SLATT_2
Motif
Other DBs
NCBI-ProteinID:
BDZ62827
LinkDB
All DBs
Position
2476394..2480266
Genome browser
AA seq
1290 aa
AA seq
DB search
MLDVNEFGDLRIGLATAEDIRNWSHGEVKKPETINYRTLKPEKDGLFCEKIFGPTRDWEC
GCGKYKRVRYRGIVCERCGVEVTRSKVRRERMGHIELAAPVTHIWYFKGVPSRLGYLLDL
APKDLEKVIYFAAYMVTEVDIDGRHEDLPQLRNELEKEKKSIANQRDVDINTRAEKLEKD
LAELEAEGAKSDVKRKVKDGAEREMANIRKRADAEIERLDAIFDRFAGLKVQDLEGDEML
YREMSRRYGSYFKGSMGAEAIQKRLQTFDLDAEAEKLREIIATGKGQRKTRALKRLKVVN
AFLTTTNSPEGMVLDCVPVIPPDLRPMVQLDGGRFATSDLNDLYRRVINRNNRLKRLLDL
GAPEIIVNNEKRMLQEAVDSLFDNGRRGRPVTGPGNRPLKSISDMLKGKQGRFRQNLLGK
RVDYSGRSVIVVGPTLKLHQCGLPKQMALELFKPFVMKRLVELNHAQNIKSAKRMVERSR
SEVWDVLEEVIREHPVLLNRAPTLHRLGIQAFEPQLVEGKAIHLHPLVCGAFNADFDGDQ
MAVHLPLSAEAQAEARVLMLSSNNILKPSDGRPVTMPSQDMIIGLYHLSLLKKGEKGEGL
VFGTQSEAVMAFDGGSLSLNAEIRLRVDGDTVPPVDVELPEGHVEGEPYMLTTTLGRSLF
NDLLPVTYPYVNRNVDKKVLGDIVNTLAERYPKVEVAASLDALKAAGFHWATRSGVTIAI
GDVATPSNKQEILERYETLAAKVQDQFETGLITDDERRQELIEIWTQATNEVDKAMRESF
PEHNTVHTMVGSGARGNWMQVRQIAGMRGLVANPKGEIIPRPIKSNYREGLSVLEYFIAT
HGARKGLADTALRTADSGYLTRRLVDVSQDVIVREDDCGTERGLTMPIVEVTAGGEKVLH
ERVATSVFARTLAVDVENAAGEVIAKAGSDVGDVIIDALIEQGVEEVKVRSVLTCESAVG
TCARCYGRSLATRELVDIGEAVGIIAAQSIGEPGTQLTMRTFHTGGVASADDITQGLPRV
QELFEARTPKGEAPISEVTGTLKVDDSEATRRLVITPDNGDEVIEYPVTKRSRLLVQDGE
HVVVGQQLVAGAVDPKNVLRILGPRATQKHLVDEVQNVYRSQGVEIHDKHIEVIVRQMLR
RVTVLDSGDTNLLPGELAERSRFENANRETVTAGGKPASARPELMGITKASLATESWLSA
ASFQETTRVLTEAAMSGKSDSLLGLKENVIIGKLIPAGTGLAQYRTATVEPTEEAKANLF
PTFGYEEWDGQFFGEGTGQAVPLEEFDTRD
NT seq
3873 nt
NT seq
+upstream
nt +downstream
nt
ttgctcgacgtgaacgagtttggcgatctgcgcatcggcctggccacggcggaggacatc
cgcaactggtcgcacggtgaggtgaagaagcccgagacgatcaactaccgcacgctcaag
cccgagaaggacggcctgttctgcgagaagatcttcggccccacccgcgactgggagtgc
ggctgtggcaagtacaagcgtgtccgctaccgcggcatcgtctgtgagcgctgcggcgtc
gaggtgacgcgctcgaaggtccgccgtgagcggatgggccacatcgagctcgccgccccc
gtcacccacatctggtacttcaagggcgtcccgtcgcgcctggggtacctgcttgacctc
gccccgaaggacctcgagaaggtcatctacttcgcggcgtacatggtcaccgaggtcgac
atcgacggccgtcacgaggaccttccgcagctccgcaacgagctcgagaaggagaagaag
tcgatcgccaaccagcgcgacgtcgacatcaacacccgtgcggagaagctcgagaaggac
ctcgccgagctcgaggcggagggtgccaagtccgacgtcaagcgcaaggtcaaggacggc
gcggagcgcgagatggccaacatccgcaagcgtgccgatgccgagatcgagcgtctcgac
gcgatcttcgaccgcttcgccggcctcaaggttcaggacctcgagggcgacgagatgctc
taccgcgagatgtcgcgtcgctacggctcgtacttcaagggctcgatgggtgcggaggcg
atccagaagcgcctccagaccttcgaccttgacgccgaggccgagaagctgcgcgagatc
atcgcgaccggcaaggggcagcgcaagacccgggccctcaagcgcctcaaggtggtcaac
gcgttcctcacgaccaccaactcgcccgagggcatggtgctcgactgcgtcccggtcatc
ccgccggacctgcgtccgatggtgcagctggacggtggccgcttcgcgacctccgacctc
aacgacctgtaccgccgcgtgatcaaccgcaacaaccgcctcaagcgactgctggatctg
ggcgcgcccgagatcatcgtgaacaacgagaagcgcatgctgcaggaggccgtcgactcg
ctgttcgacaacggccgtcgtggccgccccgtcacgggtcccggcaaccgtcccctgaag
tccatctcggacatgctcaagggcaagcagggacgtttccgccagaacctgctgggcaag
cgcgtcgactactcgggccgttcggtcatcgtggtgggcccgaccctcaagctgcaccag
tgcggcctgcccaagcagatggcgctcgagctgttcaagccgttcgtcatgaagcgactc
gtcgagctcaaccacgcgcagaacatcaagtccgcgaagcgcatggtcgagcgcagccgt
tccgaggtctgggacgtgctcgaggaggtcatccgcgagcaccccgtgctgctgaaccgc
gcgccgactcttcaccgactgggcatccaggccttcgagccccagctcgtcgagggcaag
gccattcacctgcacccgctcgtctgcggcgcgttcaacgccgacttcgacggtgaccag
atggccgtgcacctgccgctgtccgccgaggctcaggccgaggcccgcgtgctgatgctg
tcctcgaacaacatcctcaagccgtccgacggtcgcccggtgaccatgccctcgcaggac
atgatcatcggcctctaccacctctcgctcctcaagaagggcgagaagggcgagggcctc
gtgttcggcacgcagtcggaggccgtcatggcgttcgacggcggcagcctgtcgctcaac
gcggagattcgtctgcgcgtcgacggagacacggtgccgccggtggacgtcgagctgccc
gagggccacgtcgagggcgagccctacatgctcaccacgacgctcggccgttcgctcttt
aacgacctgctgccggtgacgtacccgtacgtcaaccgcaacgtcgacaagaaggtgctc
ggcgacatcgtcaacactcttgccgagcggtacccgaaggtcgaggttgccgcctcgctc
gacgcgctcaaggcggccggcttccactgggccacgcgctcgggcgtgacgatcgccatc
ggcgacgtcgcgacgccgtccaacaagcaggagatcctcgagcgctacgagaccctcgcc
gccaaggtgcaggaccagttcgagaccggtctcatcacggacgacgagcgccgccaggag
ctcatcgagatctggacccaggcgaccaacgaggtcgacaaggccatgcgtgagtcgttc
cccgagcacaacaccgtgcacaccatggtgggctcgggtgcgcgaggcaactggatgcag
gtgcgccagatcgcgggtatgcgtggcctcgtggccaacccgaagggcgagatcatcccg
cgtccgatcaagtcgaactaccgcgagggcctgtccgtcctcgagtacttcatcgcgacc
cacggtgcccgtaagggtctcgccgacaccgcgctgcgtaccgcggactcgggctacctc
acgcgtcgcctcgtcgacgtctcgcaggacgtgatcgtccgcgaggacgactgcggcacc
gagcgcggcctgacgatgccgatcgtcgaggtcaccgccggtggcgagaaagtgctgcac
gagcgcgtggcgacctcggtgttcgctcgcacgctcgcggtcgacgtcgagaacgccgcc
ggcgaggtcatcgccaaggcgggctcggacgtgggcgacgtgatcatcgacgcgctcatc
gaacagggcgtcgaagaggtcaaggtgcgctcggtcctcacctgcgagtccgccgtggga
acgtgcgcgcgctgctacggccgctcgctcgcgacccgcgagctcgtcgacatcggcgag
gcggtgggcatcatcgccgcgcagtcgatcggtgagcccggcacgcagctgacgatgcgt
acgttccacaccggtggtgtggcatcggccgacgacatcacgcagggtctgccgcgtgtc
caggagctcttcgaggcccgtacccccaagggtgaggccccgatctccgaggtcaccggc
acgctcaaggtggacgactcggaggcgacgcgccgcttggtcatcacccccgacaacggc
gacgaggtcatcgagtaccccgtcaccaagcgttcgcgcctgctcgtgcaggacggcgag
cacgtggtcgtgggccagcagctcgtggccggtgcggtcgatcccaagaacgtgttgcgc
attctcggcccccgcgccacccagaagcacctggtggacgaggtccagaacgtgtaccgc
tcgcagggtgtggagatccacgacaagcacatcgaggtcatcgttcgccagatgctgcgc
cgcgtgacggtgctcgactcgggcgacacgaacctgctgcccggcgagctcgccgagcgc
agccgcttcgagaacgcgaaccgcgagaccgtgaccgcgggcggcaagcccgcctccgcg
cgtcccgagctcatgggaatcacgaaggcgtcgctcgcgacggagtcgtggctctcggcg
gcctccttccaggagaccacgcgcgtcctcacggaggccgcgatgtccggaaagtcggac
tcgctgctgggcctcaaggagaacgtcatcatcggaaagctcatccccgctggtacgggc
ctcgcccagtaccgcacggcgacggtcgagcccaccgaggaggcgaaggccaacctgttc
ccgaccttcggctacgaggaatgggacgggcagttcttcggcgagggcacgggtcaggcc
gtcccgctggaggagttcgacactcgcgactga
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