Demequina sediminis: GCM25873_27120
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Entry
GCM25873_27120 CDS
T09136
Name
(GenBank) hypothetical protein
KO
K03657
ATP-dependent DNA helicase UvrD/PcrA [EC:
5.6.2.4
]
Organism
dss
Demequina sediminis
Pathway
dss03420
Nucleotide excision repair
dss03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
dss00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
GCM25873_27120
03430 Mismatch repair
GCM25873_27120
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
dss03400
]
GCM25873_27120
Enzymes [BR:
dss01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
GCM25873_27120
DNA repair and recombination proteins [BR:
dss03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
GCM25873_27120
MMR (mismatch excision repair)
Other MMR factors
GCM25873_27120
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD_C
UvrD-helicase
UvrD_C_2
AAA_19
PcrA_UvrD_tudor
CarD_TRCF_RID
Viral_helicase1
Motif
Other DBs
NCBI-ProteinID:
BDZ62921
LinkDB
All DBs
Position
2555274..2557115
Genome browser
AA seq
613 aa
AA seq
DB search
MASRFSIEHAAAHAYPLYQRRLAAANAVDFDDIIVRTVRLLQDHPQVARAYRERFRHILV
DEYQDTNHAQYVLVRELVGPADDASLPPAELTVVGDADQSIYAFRGATIRNILEFEKDYP
NAHIVRLEQNYRSTQNILSAANAVIANNSDRRPKNLWTDSGAGATITGYAADTEQGEAQY
IATEIRRLIDANEAQPSDIAIMYRANAQSRAIEERFIRAEIPYKVVGGTRFYERKEIKDM
LAYLAAVVNEDDDIATRRIINTPKRGIGDTAVDSVEAVRRSLALAGEQVSFGTSLRRLDD
AGLAARSRRAIEDFVRLMDDLRALAKDNGAAGVLDAIADRSGMLASLRSSEDPQDASRIE
NIMELVAVGREFSEDNPEGTLADFLEKVALVADADQVPDADGTGGVVTMMTLHTAKGLEF
PVVFLTGMEDGTFPHMRSIESGDLKDMEEERRLAYVGLTRARERLYLTRAEARSSWGSPQ
YFGASRFVEEIPADLMTWTRAAVTMSSLRATSDRGSSRSGAWSGMGYGGNQDREDGNTYS
RAGAVSTRRVPPSPPGVGSGDIGFEVGERVLHDKHGMGKVVGTEGVGRNAVVKVDFGGDV
KRLVLRFNNLDKL
NT seq
1842 nt
NT seq
+upstream
nt +downstream
nt
atggcgtcgcgcttctcaatcgagcatgccgccgcgcacgcgtatccgctgtaccagcgc
cggctcgcggcggccaacgccgtcgacttcgacgacatcatcgtgcgcacggtgcggctt
ctccaggatcacccgcaggtggcgcgcgcgtatcgcgagcgcttccgccacatcctggtc
gatgagtaccaggacaccaaccacgcgcagtatgtgctcgtgcgcgagctggtcgggccc
gccgacgatgcaagcctcccgcccgccgagctcacggtcgtcggtgacgctgaccagtcg
atctacgcgttccgcggcgcgaccattcgcaacatcctcgagtttgaaaaggactatccg
aacgcgcacatcgtgcgcctcgagcagaactaccgttcgacgcagaacatcctgtccgcg
gccaacgcggtgatcgcgaacaactcggaccgccgtcccaagaacctgtggacggactcg
ggcgcgggcgcgaccatcacgggctacgccgcggacaccgagcagggcgaggcgcagtac
atcgcgaccgagatccgccgcctcatcgacgcgaacgaggcccagccttcggacatcgcg
atcatgtaccgcgcgaacgcgcagtcccgcgcgatcgaggagcgcttcatccgcgccgag
atcccctacaaggtcgtcggcggcacgcgcttctatgagcgcaaggagatcaaggacatg
ctcgcgtacctcgccgccgtggtgaacgaggatgacgacatcgcgacccgccgcatcatc
aacacgcccaagcgtggaatcggggacacggcggtggactccgtcgaggcggtgcgccgc
tcgctcgcgctcgctggcgagcaggtgagcttcgggacgtcgctgaggcgcctggacgat
gccgggcttgcggcccgctcgcggcgcgccatcgaggacttcgtgcggctcatggacgac
ctgcgcgcgctcgcgaaggacaacggcgctgcgggggtgctcgacgcgatcgcggaccgc
agcggcatgctggcgtcgctgcgatcgagcgaagacccgcaggacgcgagccgcatcgag
aacatcatggagctcgtcgcggtggggcgtgagttctccgaggacaaccccgagggcacg
ctcgccgacttcctcgagaaggtcgcgctggtcgccgatgccgatcaggtgcccgatgcc
gacggcaccggcggcgtggtcacgatgatgaccctgcacaccgcgaagggcctcgagttc
cccgtggtcttcctcacgggcatggaggacggcacgttcccgcacatgcggtcgatcgag
tcgggcgacctcaaggacatggaggaggagcggcgccttgcctacgtgggcctcactcgc
gcgcgcgagcggctctacctcacgcgagccgaggcgcggtcctcgtggggatccccgcag
tacttcggcgcgagccgctttgtcgaggagatcccggccgatctcatgacgtggacgcgc
gccgcggtcacgatgtcctcgctgcgtgccacctcggaccgcggcagctcccgctccggc
gcatggtcgggcatgggctacggcggcaaccaggatcgcgaggacggcaacacgtattcg
cgcgcgggtgcggtcagcacgcggcgggtgccgccgagcccgccgggcgtgggctcgggg
gacatcggcttcgaggtgggcgagcgcgtgctgcacgacaagcacggcatgggcaaggtc
gtgggcaccgagggcgtgggccgcaacgcggtggtcaaggtcgacttcggcggcgacgtg
aagcgcctcgtgttgcgcttcaacaacctcgacaagctgtag
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