Demequina sediminis: GCM25873_27650
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Entry
GCM25873_27650 CDS
T09136
Name
(GenBank) DNA helicase
KO
K03657
ATP-dependent DNA helicase UvrD/PcrA [EC:
5.6.2.4
]
Organism
dss
Demequina sediminis
Pathway
dss03420
Nucleotide excision repair
dss03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
dss00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
GCM25873_27650
03430 Mismatch repair
GCM25873_27650
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
dss03400
]
GCM25873_27650
Enzymes [BR:
dss01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
GCM25873_27650
DNA repair and recombination proteins [BR:
dss03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
GCM25873_27650
MMR (mismatch excision repair)
Other MMR factors
GCM25873_27650
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
UvrD_C
AAA_19
HRDC
UvrD_C_2
Viral_helicase1
AAA_30
AAA_12
Motif
Other DBs
NCBI-ProteinID:
BDZ62974
LinkDB
All DBs
Position
2616387..2618369
Genome browser
AA seq
660 aa
AA seq
DB search
MSADQILDALDPEQREVATALHGPVVVLAGAGTGKTRAITHRIAYGVRVNAYTPQSVLAV
TFTARAAGEMRQRLRGLGVDGVQARTFHAAALRQLSYFWPEVVGGQIPRLVEQKASLVGR
AARDAGISPDRLTVRDLASEIEWAKVSLVDPADYPAKVARIGRPTPAGLAPAQVQDVMRA
YEDVKTQAVVLDFEDILLLLADMIGRHPEVGDQIRRQYRHFVVDEYQDVSPLQQFLLEQW
LGGRRELCVVGDPAQTIYSFAGASPQHLLGFSRTYPDATTVRLVRDYRSTPQVVRLANEL
MRRRGAAGAGVELVAQRPSGPAPGYRAYDDDAAEAEGVATGIATLIASGVPASEIAVLYR
ANSQSEALEEALAERGIGYLVRGGQRFFDRDEVKRAVVLLRGAAVAPDERPLGERVRDTL
GELGWAEDPPAARGAVRERWDALQALVNLADDVDSDAGGAATVRDFVEHLAERAQAQHAP
SVEGVTLTTMHAAKGLEWDAVFIVGCSEGLLPISLAETDEAVEEERRLLYVAITRAREHL
ALSFARSRKAGGKATRKRTRFLEQQWPDARPARVARQSTSAKLADLDAEQLRLFDSLKRW
RLEVAQADSKPAFTVMVDTSLVEIARDRPANLRELAGVSGIGASKLDKYGLQILEIVAAH
NT seq
1983 nt
NT seq
+upstream
nt +downstream
nt
atgtcagccgatcagatcctcgacgccctcgaccccgaacagcgggaggtcgcgaccgcc
ctgcacggacccgtcgtggtcctcgccggcgcaggcacgggcaagacccgcgccatcacc
caccgcatcgcgtacggggtgagggtcaacgcgtatacgccgcagtcggtgcttgccgtg
acgttcaccgcgcgcgcggcgggagagatgcgacagcgtctgcgcggattgggtgtcgac
ggcgtgcaggcacgcacgttccacgcggccgcgctgcgccagctgtcctacttctggccc
gaggtcgtgggtggtcagattccgcgcctcgtcgagcagaaggcgtcgctcgtgggtcgc
gccgcgcgggacgcgggcatcagccccgaccgcctcacggtgcgcgacctcgcctcggag
atcgagtgggccaaggtgtcgctcgtcgacccggcggactatcccgccaaggtcgcgcgg
atcggccgccccacccccgcgggcctcgcgccggcgcaggtccaggacgtgatgcgggcc
tacgaggacgtgaagacccaagcagtggtgctcgacttcgaggacatcctgctgctgctc
gcggacatgatcggccgccaccccgaggtgggcgaccagatccgccgccagtaccggcac
ttcgtggtcgacgagtaccaggacgtctcgccgctgcagcagttccttctcgagcagtgg
ctcggcgggcgccgcgagctgtgcgtcgtgggagacccggctcagaccatctactcgttc
gccggcgcgagccctcagcacctgttgggtttctcccgcacgtatcccgatgccacgacg
gtgaggctggtgcgggactatcgctcgacgccgcaggtggtgcggctggccaatgagctc
atgcggcgccgcggcgctgcgggcgcgggggtcgagctggtggcccagcggccgtcggga
cccgcgcccggctatcgcgcgtatgacgacgatgccgcggaggccgagggggtcgcgacg
ggcatcgcgacgctcatcgcctccggcgtgcccgcctccgagatcgcggtcctctaccgc
gccaacagccagtccgaggcactggaggaggcgctcgccgagcgcggaatcggctacctc
gtgcgcggtggacagcgcttcttcgatcgcgacgaggtcaagcgcgcggtggtgctcctg
cgcggggcggcggtggcccccgacgagcgccccttgggtgagcgcgtgcgcgacacgctc
ggcgagctcggctgggccgaggatccccctgccgcgaggggagcggtgcgcgagcggtgg
gacgccttgcaggcgctcgtcaacctggccgacgacgtcgactccgacgcgggcggggcc
gcgaccgtgcgcgacttcgtggaacacctggccgagcgcgcgcaggcccagcatgcgccc
tcggtcgagggcgtcaccctcacgacgatgcacgcggccaagggcctcgagtgggacgcg
gtgttcatcgtcggatgctcggaaggcctcctgcccatcagcctcgcggagaccgacgag
gccgtcgaggaggagcgcaggctgctgtacgtcgcgattacgcgcgccagggagcacctc
gccttgagctttgcgcggtcgcgcaaggcgggaggcaaggccacccgcaagcgcacgcgc
tttctcgagcagcagtggcccgacgcccgtcccgcgcgtgtcgcgcggcagtcgacgtcc
gcgaagctcgccgatctcgacgccgaacagctacgcctgttcgactcgctcaagcggtgg
cgactcgaggtcgcgcaggccgactccaagccggcgttcaccgtgatggtcgacacgtca
ctcgtggagatcgcgcgcgaccgccccgcgaacctgcgcgagctggccggcgtcagcggg
atcggcgcctcgaagctcgacaagtacgggctgcagatcctcgagatcgtcgccgcgcac
tag
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