Dolosigranulum savutiense: VUQ06_08190
Help
Entry
VUQ06_08190 CDS
T10362
Symbol
rlmD
Name
(GenBank) 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD
KO
K03215
23S rRNA (uracil1939-C5)-methyltransferase [EC:
2.1.1.190
]
Organism
dst Dolosigranulum savutiense
Brite
KEGG Orthology (KO) [BR:
dst00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
dst03009
]
VUQ06_08190 (rlmD)
Enzymes [BR:
dst01000
]
2. Transferases
2.1 Transferring one-carbon groups
2.1.1 Methyltransferases
2.1.1.190 23S rRNA (uracil1939-C5)-methyltransferase
VUQ06_08190 (rlmD)
Ribosome biogenesis [BR:
dst03009
]
Prokaryotic type
rRNA modification factors
23S rRNA modification factors
VUQ06_08190 (rlmD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
tRNA_U5-meth_tr
Methyltransf_31
TRM5-TYW2_MTfase
RrnaAD
Methyltransf_25
Cons_hypoth95
MTS
PrmA
Methyltransf_15
N6_N4_Mtase
TRAM
UPF0020
Methyltransf_32
Methyltransf_11
Methyltransf_4
DOT1
PCMT
TPMT
Methyltrans_SAM
Methyltransf_12
FtsJ
Motif
Other DBs
NCBI-ProteinID:
XBC49454
UniProt:
A0AB74TSF7
LinkDB
All DBs
Position
1759797..1761176
Genome browser
AA seq
459 aa
AA seq
DB search
MAAKRTIPVEKNQHYTARIEDYTHKGWGVAKIEGYPIFIEGALIREVVNFRIISTGKSFS
RGEVQEIIEESPHRVPIIGQAYAESGTMDLQHMNYEEQLRFKTDQVKQAISRIAKLDSVK
VHDIIGMNFPYEYRNKAQVPVREREDGRLYSGFFKQQSHEVVSIENFIIQDPVIDEAITE
VRQILEKHGLSGYDPATNTGDVRHIMIRRGHYTREMMVVIVLNRTTFPDQDTIVSEIVHS
LPNVVSIIFNVNTKKTNLVLGEQSTVLFGEDIYRDKLLGFTFNISHRSFFQVNTLQTEKL
YEQALDYAAISRNDVVIDAYCGIGTLTLALAKKAQKVYGIEMIEAAVTDARKNAALNHVE
RTEFITSDASQWMAQFVSDENKANIIVVDPPRKGLTEDFINKAVAVEPRRMVYISCNPAT
LARDLKLFDELGYTAREIQPVDMFPQTYHVEAIALIQKM
NT seq
1380 nt
NT seq
+upstream
nt +downstream
nt
atggcagctaaacgaactattccagtagaaaaaaatcaacactatacagcgcgtattgaa
gattatacccataaaggttggggtgttgctaaaatagagggctatccaatctttattgaa
ggtgcattgatcagggaagtcgttaattttcggatcatatcgaccggaaaatcttttagt
cgtggggaagtacaggagattattgaagaaagtccacatcgagtgcctattattggtcaa
gcatatgccgagagtggcacgatggatttgcagcacatgaattacgaggaacaattacga
ttcaagacagatcaagtcaaacaagcaatctcccgtattgcaaagctggattctgtcaaa
gtgcatgatatcattgggatgaattttccatatgaatatcgtaataaagctcaagttcct
gttcgtgaacgggaggatgggcgactgtatagtggattcttcaagcaacaaagtcatgaa
gttgtttccattgagaacttcattattcaagatccggttattgacgaagcaataacagaa
gttcgccaaatcttggagaaacatggcttgagtggatatgatccagcgacgaatacaggc
gatgtgcgacatatcatgattcgccgaggccattatacgcgcgagatgatggttgttatt
gttctaaatcggacaaccttccctgaccaagacacaattgtatcagagatcgtccattcg
cttcccaatgtcgtcagtattatcttcaacgtgaatacgaaaaaaacaaacttagttctt
ggggaacaatcaactgttctttttggagaagatatttatcgtgataagttattaggattt
acgtttaatatctcacaccgttcattcttccaagtgaacacacttcagactgaaaaattg
tatgagcaggccttggactatgcagctatatcacgcaatgatgttgtgattgatgcgtat
tgtgggattggaacattaacgcttgcgctagcaaaaaaagcccaaaaagtgtatgggatt
gaaatgattgaagccgctgttacggacgcgcgcaaaaatgccgcgttgaatcacgtggaa
cgcaccgaatttatcacaagtgatgctagtcagtggatggcgcaattcgtgagcgatgag
aataaagcaaacattattgtagtggatccaccacgaaaagggttaaccgaagattttata
aacaaagctgttgcagttgaaccacgacgcatggtctatattagttgcaatccggctact
ttggcccgtgatttgaagttatttgacgaacttggctacactgcaagagaaatccagccg
gtcgatatgttcccacaaacgtatcacgtggaggccatagcgttgatacaaaagatgtaa
DBGET
integrated database retrieval system
