Azospira oryzae: Dsui_1373
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Entry
Dsui_1373 CDS
T01657
Name
(GenBank) ATP-dependent helicase HrpA
KO
K03578
ATP-dependent RNA helicase HrpA [EC:
5.6.2.6
]
Organism
dsu
Azospira oryzae
Brite
KEGG Orthology (KO) [BR:
dsu00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
dsu03019
]
Dsui_1373
Enzymes [BR:
dsu01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
Dsui_1373
Messenger RNA biogenesis [BR:
dsu03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
Dsui_1373
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DUF3418
OB_NTP_bind
HA2_C
Helicase_C
AAA_22
DEAD
HA2_N
AAA_19
nSTAND3
T2SSE
AAA_23
NACHT
AAA_30
SLFN-g3_helicase
AAA_25
ABC_tran
Motif
Other DBs
NCBI-ProteinID:
AEV25768
UniProt:
G8QMY3
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All DBs
Position
1427026..1430988
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AA seq
1320 aa
AA seq
DB search
MCQNTALQFFHPPIVSLPRSAPPAFADCLTQDRPRLRALSRSAGQPGPHAEKAKADYEAL
LARSRAACAEWAGRLPKPEYAEDLPVNGRREEIKALIEHNQVVIVCGETGSGKTTQLPKI
CLELGRGAAGLIGHTQPRRLAARSVAARVAQELQTQIGAGVGVKIRFQDRSGPQSYLKLM
TDGILLAETQTDPYLNAYDTIIIDEAHERSLNIDFLLGYLKQLLAKRKDLKVIITSATID
AERFAQHFAQHGKPAPVIEVSGRLYPVEVRYRPVTPLEEDQEERDLYDAIVDAVHELGRE
GPGDVLVFLPGEREIREAAEALRKHHFPGPQPEILPLFSRLSAAEQDRVFKTGGGRRVVL
ATNVAETSLTVPGIRYVVDTGLARVKRYSYRNKVEMLQVERVSQAAARQRAGRCGRVAAG
VCIRLYDEADFNARGEFTDPEILRSSLAGVILRMKALKLTDVESFPFIEAPPPKAINDGY
SLLQELGGLDEDNRLTDVGRGLAKLPLDPRIARMIVAARDRGCLKEVLVIAAALSVQDPR
ERPQERLQAADEKHRQFADEKSEFLSWLKLWNWFEEQARHLSGRKLAEACKERFLSYLRM
REWREVYNQIHAMVTELGWRENEIPATYEPIHKALLTGLLGNIGCKSDDSSHYLGARGIR
FLIHPGSPLQKKAGKWVVCAELTETTKLYARCLARIEPEWLEEVGAHLIRKSYFDPHWEK
KAMQAVAYERSTLHGIVVNPKKRVNFGPMNPEEARLLFIRQGLVGGEINEDFVRRWPFYQ
HNQKAIRDIENLEHKQRRQDVLVDDELIFAFYDHLIPSGIYNGADFDKWRKEAERENQKL
LFLQKEDLMRHEAAGVTTDAFPPQMRLSGVDYALTYHFEPGSPRDGVTLVLPLAQLNQVP
ANRSEWLVPGLLKEKVVQLVKTLPQRIRAKLVPVPEFAEEFIAWVGNDEKRMAPGIIAPL
IDFIFESRGLNARGWAVTPDAFRPGELPAHFSMNFKLVDEHGRQLDMSRSLAQLRGEWGR
EARQEFQELHETPSEFTGLTDWTFGKLPELMEVAVGGQMVIGYPGLTEDGETVSLRVYDS
QEEALAAHRLGLSRLFQLQLKEQVKYFEKNLPGLTQMAMQFMSLGSSDDLRQQLVSVIFE
RACLVEPWPEDAESFKARCAEGKNRLGLLAQEICRLVGLVLTEWQALVKKLPAFKPFPGA
VQDIEKQIGRLIHKRFVLETPFERLQHFPRYLKAAAMRLDKLKANPARDVQLLADYSTLW
TQYERRALQLAKQGVSDPQLEQFRWLLEELRVNLFAQELKTPVPVSVKRLQKLWEGIQYG
NT seq
3963 nt
NT seq
+upstream
nt +downstream
nt
ttgtgccaaaataccgccttgcaattttttcaccccccgattgtgtccctcccccgttcc
gctccgcctgcctttgccgactgcctgacccaggatcgtccccgtctgcgcgccctttcc
cgcagcgccggccagcccggtccccatgccgagaaggccaaggccgactacgaggccctg
ctggcccgctcccgcgccgcctgtgccgagtgggccgggcgcctgcccaagccggaatat
gcggaggacctgccggtcaacgggcggcgggaggagatcaaggccctcatcgagcacaac
caggtggtcatcgtctgcggcgagaccggctccggcaagaccacccagctgcccaagatc
tgcctggaactgggccggggggcggcgggactgatcggccatacccagccccggcgcctg
gcggcccgctccgtggcggcccgggtggcccaggagctgcagacccagatcggtgccggc
gtgggggtgaaaatccgcttccaggaccgtagcgggccccagtcctatttgaagctgatg
accgacggcatcctgctggcggaaacccagaccgacccctacctcaacgcctacgacacc
atcatcatcgacgaggcccacgagcgcagcctcaacatcgactttctgctgggctatctg
aagcagctgctggccaagcgcaaggacctcaaggtcatcatcacctccgccaccatcgac
gcagagcgctttgcccagcacttcgcccagcacggcaagccggcgccggtgatcgaagtc
tccggccgcctctacccggtggaggtgcgctaccgcccggtgacgcccctggaggaagac
caggaggagcgggatctctacgacgccatcgtggacgcggtccacgaactgggccgggaa
ggcccgggagacgtgctggtgttcctccccggcgagcgggaaatccgggaggcggcggaa
gccctgcgcaagcaccacttccccggcccccagccggaaatcctgccgctgttctcccgc
ctctcggcggcggagcaggaccgggtcttcaagaccggcggcggccgccgggtggtgctg
gccaccaacgtggcggaaacctccctcaccgtgccgggcatccgctacgtggtggatacg
ggcctggcccgggtgaagcgctactcctaccgcaacaaggtggaaatgctccaggtggag
cgggtctcccaggccgcggcgcggcagcgggcgggccgttgcggccgggtggcggcgggg
gtctgcatccgcctctacgacgaggctgacttcaacgcccggggcgaattcaccgatccg
gaaatcctgcgttcctccctggccggggtgatcctgcgcatgaaggccttgaagctcacc
gacgtggagagcttccccttcatcgaggcgccgccgcccaaggccatcaacgacggctat
tccctgctgcaggaactgggcggcctggacgaggacaaccgcctcaccgacgtgggccgg
ggcctggccaagctgcccctggacccgcgcatcgcccgcatgatcgtggccgcccgggac
cggggctgcctcaaggaagtgctggtcatcgccgccgccctctcggtgcaggaccccagg
gaacggccccaggagcgcttgcaggcggcggatgaaaagcaccgccagttcgccgacgag
aagtccgaattcctctcctggttgaagctgtggaactggtttgaggaacaggcccggcac
ctctccgggcgcaagttggccgaggcctgcaaggagcgtttcctctcctacctgcgcatg
cgggaatggcgggaggtttacaaccagatccacgccatggtcaccgagctgggctggcgc
gagaacgagattcccgcgacctacgagcccatccacaaggccctgctgacgggcctcctg
ggcaatatcggctgcaagtccgacgacagcagccactacctgggggcccggggcatccgc
ttcctcatccacccgggctcgcccctgcagaagaaggcgggcaagtgggtggtctgcgcc
gagctgacggaaaccaccaagctctacgcccgctgcctcgcccgcatcgagccggaatgg
ctggaggaggtgggcgcccacctgatccgcaagagctacttcgacccccactgggagaaa
aaggccatgcaggccgtggcctacgagcgctccaccctgcacggcatcgtcgtcaatccc
aagaagcgggtgaacttcggccccatgaacccggaagaggcgcgcctgctcttcatccgc
cagggcctggtgggcggcgagatcaacgaggacttcgtgcgccgctggcctttctaccag
cacaaccagaaggccatccgggacatcgagaacctggaacacaagcagcgccgccaggac
gtgctggtggacgacgaactgatctttgccttctacgaccacctgattccctcgggcatc
tacaacggtgccgacttcgacaagtggcgcaaggaggcggagcgggagaaccagaaactg
ctcttcctgcagaaggaagacctgatgcgccacgaggcggccggggtcaccaccgacgcc
ttccctccccagatgcgcctttccggcgtggactacgccctcacctaccacttcgagccc
ggcagcccccgggacggcgtcaccctggtgctgcccctggcccagctcaatcaggtgccc
gccaaccgcagcgagtggctggtgcccggcctcttgaaggagaaggtggtgcagctggtg
aagaccctgccccagcgcatccgcgccaagctggtgccggtgcccgagttcgccgaggag
ttcatcgcctgggtgggcaacgacgagaagcgtatggcgccgggcatcatcgcccccctc
atcgacttcatcttcgaatcccggggcctcaatgcccggggctgggcggtgacgcccgat
gccttccgccccggcgagctgccggcccacttctccatgaacttcaagctggtggatgaa
cacggtcgccagctcgacatgagccgcagcctggcccagctccgcggcgaatggggccgg
gaggcgcgccaggaattccaggagctgcacgagacccccagcgaattcaccggcctcacc
gattggaccttcggcaagctgccggagctgatggaagtggccgtgggcggccagatggtg
atcggctacccgggcctgacggaagacggcgagaccgtttccctgcgcgtgtacgactcc
caggaggaagccctggcggcccaccgcctgggcctctcccgcctcttccagttgcagctg
aaggagcaggtgaagtacttcgagaagaacctgccgggcctgacccagatggccatgcag
ttcatgagcctgggttcttccgacgacctgcgccagcagctggtgtcggtgattttcgag
cgggcctgcctggtggaaccgtggccggaagatgcggaatccttcaaggcccgctgcgcc
gaaggcaagaaccgcctgggcctcttggcccaggaaatctgtcgcctggtgggcctggtg
ctgaccgagtggcaggccctggtgaaaaagctgcctgccttcaaacctttccccggtgcg
gtgcaggatatcgagaagcagatcggccgcctcattcacaaacgcttcgtgctggaaacg
cccttcgagcgcctgcagcacttcccccgctacctcaaggcggcggccatgcgcctggac
aagctcaaggccaacccggcccgggacgttcagctgctggcggactacagcaccctgtgg
acccagtacgaacgccgcgccctgcagctggccaaacagggcgtcagcgatccccaactg
gagcagttccgctggctgctggaggaactgcgggtcaatctcttcgcccaggaactgaag
acgccggtgcccgtgtcggtgaagcgcctgcagaagctgtgggaagggatacagtacggt
tga
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