Azospira oryzae: Dsui_2385
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Entry
Dsui_2385 CDS
T01657
Name
(GenBank) transcription-repair coupling factor Mfd
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
dsu
Azospira oryzae
Pathway
dsu03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
dsu00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
Dsui_2385
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
dsu03400
]
Dsui_2385
Enzymes [BR:
dsu01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
Dsui_2385
DNA repair and recombination proteins [BR:
dsu03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
Dsui_2385
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
DEAD
UvrB_inter
Helicase_C
CarD_TRCF_RID
MFD_D3
ResIII
UB2H
Glyco_tran_WecG
Cas3-like_C_2
HemY_N
AroM
PBP_like_2
Motif
Other DBs
NCBI-ProteinID:
AEV26745
UniProt:
G8QLV5
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All DBs
Position
complement(2535212..2538808)
Genome browser
AA seq
1198 aa
AA seq
DB search
MNLPRLHCGASPAPASANGSAPAGPAPLGYNPASPACLIYLLVSASTSPALPELPPEISR
ALAQLPRSGERLHLPPLAGSADALALARLGSQARSQKRLLAVLTASPADAQRLLEEIPWF
APDLKVRLLPDWETLPYDNFSPHHDLVSERLATLYAVSRGECEVLLVPATTAVYRLTPPS
YLAAYTFFLKKGEKLDAEQFRSQLTLAGYTHVTQVVSPGEYSIRGGLVDLFPMGSALPYR
IDLFDEEIETLRTFDADTQRSLYPVPEIRLLPAREFPLDDGGRTRFRQRFREVFEGDPAK
SGIYKDVSNGVPSAGIEYWLPLFFEETATLFDYLPKDAVLCQHRDVALALQDFWRDTQSR
YNMLAGDKARPLLPPAELFLSEEQFFVAAKDYAKLILGTPAEGMPPLATAVPTVAVERRA
EDPLTALKQFIAGRQGRRTLLLAESAGRRETLQQLLLEHGLKPAASADFAAFLGGDAPLA
LGVAPLQSGFCLDGLAIITETELYAGSPNRRSRQNAQRRASMDNWLRDLTELKVGDPVVH
ESHGIGRYMGLLHLDLGEGDTEFLELHYANEAKLYVPVSQLHVISRYSGNEPDAAPLHSL
GSGQWEKAKKKAAEQARDTAAELLALYAARAARQGHAFAFTENDYEAFADGFGFEETEDQ
ATAIAAVIEDMKSGKPMDRLVCGDVGFGKTEVALRAAFVAVAGGKQVAVLCPTTLLCEQH
YQTFKDRFADWPVQIAELSRFKTAKETAQAMKDLEAGKIDIVIGTHKLLSKEMKFDRLGL
VMIDEEHRFGVRQKEALKALRAEVDVLTLTATPIPRTLAMSLEGLRDFSVIATAPQKRLA
IKTFVAKFSDGIIREAVLRELKRGGQVYFLHNEVDTIDNMREKLQSLVPEARIVVGHGQM
NERELERVMRDFTQQRANLLLCTTIIETGIDNPHANTILINRAEKFGLAQLHQLRGRVGR
SHHQAYSYLLVQDEKALTKQAKQRLEAIQHMEELGAGFYLAMHDLEIRGAGEVLGENQSG
EMQEVGFNLYTEMLNRAVAALKQGREPDLTQPLGVTTEINLHAPALLPDAYAPDVHERLT
LYKRLSNCETEEDINALQEELIDRFGELPPQGQCLLATHRLRLLARPLGIVKLDATASQL
TVQFCPNPPIEPIRIIELIQKNRHFKLAGQDKLAVVRHMPTLKERVDAVKDLFRQLGA
NT seq
3597 nt
NT seq
+upstream
nt +downstream
nt
atgaatcttccccggctgcactgcggcgccagcccggccccggcgtcggcaaacggcagc
gccccggccgggccagcgcccctgggctataatcctgcctcccccgcctgcctgatttac
ctcctcgtgtccgcctccacctcgcccgccctgcccgaactgcctcccgaaatttcccgc
gccctggcccagctgccgcgcagcggcgaacgcctgcacctaccgcccctggccggttcc
gccgacgccctggccctggcccggctgggcagccaggcccgcagccagaagcgcctgctg
gccgtgctcaccgccagcccggcggacgcccagcgcctgctggaggaaattccctggttc
gcgccggacctgaaggtgcgcctgctgccggactgggaaaccctgccctacgacaatttc
tcgccccaccacgacctggtctccgagcgcctggccaccctctacgccgtcagccggggc
gagtgcgaagtgctgctggtgccggccaccaccgccgtctaccgcctgactccacccagc
tacctggcggcctacaccttcttcctgaaaaagggcgagaagctggacgccgagcagttc
cgcagccagctcaccctggccggctacacccacgtcacccaggtggtgtcgccgggggaa
tactccatccgcggcggcctggtggacctgttccccatgggctcggccctgccctaccgc
atcgacctcttcgacgaagagatcgagaccctgcgcaccttcgacgccgacacccagcgc
agcctctacccggtgccggaaatccgcctgctgccggcccgggaattccccctggacgac
ggcggccgcacccgcttccgccagcgcttccgcgaagtcttcgaaggtgatccggccaag
tccggcatctacaaggacgtctccaacggcgtcccttccgccggcatcgaatactggctg
cccctcttcttcgaggaaaccgccaccctcttcgactacctgcccaaggacgccgtgctc
tgccagcaccgggacgtggcgcttgccctgcaggacttctggcgcgacacccagtcccgc
tacaacatgctggccggcgacaaggcccggcccctgctgcccccggccgagctgttcctc
tccgaggagcagttcttcgtcgccgccaaggactacgccaagctgatcctgggcaccccg
gcggaaggcatgccgcctctggccaccgccgtccccaccgtggcggtggaacggcgggcc
gaggacccgctgaccgccctcaagcagttcatcgccggccgccaggggcgccgcaccctg
ctcctggccgaatccgccggccgccgcgaaaccctgcagcaactgctgctggaacacggc
ctcaagcccgccgccagcgccgactttgccgccttcctcggcggcgacgcgcccctggcc
ctgggcgtggcccccctgcaaagcggcttctgcctcgacggcctggccatcatcaccgag
accgagctgtacgccggcagccccaaccgccgcagccgccagaacgcccagcgccgggca
tccatggacaactggctgcgggacctgaccgagctcaaggtgggcgacccggtggtgcac
gaatcccacggcatcggccgctacatgggcctgctgcacctggacctgggcgaaggcgac
accgaattcctggagctgcactacgccaacgaggccaagctgtacgtgcccgtctcccag
ctccacgtcatctcccgctactccggcaacgagcccgatgcggcgcccctccacagcctg
ggctcgggccagtgggaaaaggccaagaagaaggccgccgaacaggcccgggacaccgcc
gccgaactgctggccctctacgccgcccgggcggcgcgccagggccatgccttcgccttc
accgaaaacgactacgaggctttcgccgacggcttcggcttcgaggagacggaagaccag
gccaccgccatcgccgcggtgatcgaggacatgaagtcgggcaagcccatggaccgcctg
gtgtgcggcgacgtgggcttcggcaagaccgaagtggccctgcgcgccgccttcgtcgcc
gtggccggcggcaagcaggtggcggtgctgtgccccaccaccctgctctgcgaacagcac
taccagaccttcaaggaccgcttcgccgactggccggtgcagatcgccgaactgtcccgc
ttcaagaccgccaaggaaaccgcccaggccatgaaggacctggaggcgggcaagatcgac
atcgtcatcggcacccacaagctgctctccaaggagatgaagttcgaccgcctgggcctg
gtcatgatcgacgaggaacaccgcttcggcgtgcgccagaaggaggccctgaaggccctg
cgggccgaggtggatgtgctgaccctgaccgccacccccatcccccgcaccctggccatg
agcctggaaggcctgcgggacttttcggtgatcgccacggcgccccagaagcggctggcc
atcaagaccttcgtcgccaagttctccgacggcatcatccgcgaggcggtgctgcgggaa
ctgaagcggggcggccaagtgtacttcctgcacaacgaggtggacaccattgacaacatg
cgggagaagctccagtccctggtgcccgaggcccgcatcgtggtcggccacggccagatg
aacgagcgggagctggaacgggtgatgcgggacttcacccagcagcgggccaacctgctg
ctatgcaccaccatcatcgagaccggcatcgacaatccccacgccaacaccatcctcatc
aaccgggccgaaaaattcggcctggcccagctgcaccagctgcggggacgggtcggccgc
tcccaccaccaggcctactcctacctcctggtgcaggatgaaaaggccctgaccaagcag
gccaagcagcgcctggaggccatccagcatatggaagagctgggggccggcttctacctg
gccatgcacgacctggaaatccgcggcgccggcgaggtactgggggaaaaccagtccggc
gaaatgcaggaggtgggcttcaacctgtacaccgagatgctcaaccgggcggtggccgcc
ctcaagcagggcagggagccggacctgacccagcccctgggcgtcaccacggaaatcaac
ctgcacgccccggccctgctgcccgacgcctacgcccccgacgtgcacgagcgcctgacc
ctctacaagcgcctctccaactgcgaaacggaggaggacatcaacgcactgcaggaagag
ctgatcgaccgcttcggagagctgccgccccagggccagtgtctgctggccacccaccgc
ctgcgcctgctggccaggcccctgggcatcgtcaagctggacgccactgccagccagctg
accgtgcagttctgccccaatccgcccatcgagcccatccgcatcatcgaactgattcag
aaaaaccgtcacttcaagctggccgggcaggataaactggcagtcgttcgtcatatgccg
accctcaaggaacgggtcgatgcagtgaaggatctgttccggcaactgggcgcctga
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