KEGG   Azospira oryzae: Dsui_2385
Entry
Dsui_2385         CDS       T01657                                 
Name
(GenBank) transcription-repair coupling factor Mfd
  KO
K03723  transcription-repair coupling factor (superfamily II helicase) [EC:5.6.2.4]
Organism
dsu  Azospira oryzae
Pathway
dsu03420  Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:dsu00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03420 Nucleotide excision repair
    Dsui_2385
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:dsu03400]
    Dsui_2385
Enzymes [BR:dsu01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.4  DNA 3'-5' helicase
     Dsui_2385
DNA repair and recombination proteins [BR:dsu03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    TCR (transcription coupled repair) factors
     TRCF (transcription-repair coupling factor)
      Dsui_2385
SSDB
Motif
Pfam: TRCF DEAD UvrB_inter Helicase_C CarD_TRCF_RID MFD_D3 ResIII UB2H Glyco_tran_WecG Cas3-like_C_2 HemY_N AroM PBP_like_2
Other DBs
NCBI-ProteinID: AEV26745
UniProt: G8QLV5
LinkDB
Position
complement(2535212..2538808)
AA seq 1198 aa
MNLPRLHCGASPAPASANGSAPAGPAPLGYNPASPACLIYLLVSASTSPALPELPPEISR
ALAQLPRSGERLHLPPLAGSADALALARLGSQARSQKRLLAVLTASPADAQRLLEEIPWF
APDLKVRLLPDWETLPYDNFSPHHDLVSERLATLYAVSRGECEVLLVPATTAVYRLTPPS
YLAAYTFFLKKGEKLDAEQFRSQLTLAGYTHVTQVVSPGEYSIRGGLVDLFPMGSALPYR
IDLFDEEIETLRTFDADTQRSLYPVPEIRLLPAREFPLDDGGRTRFRQRFREVFEGDPAK
SGIYKDVSNGVPSAGIEYWLPLFFEETATLFDYLPKDAVLCQHRDVALALQDFWRDTQSR
YNMLAGDKARPLLPPAELFLSEEQFFVAAKDYAKLILGTPAEGMPPLATAVPTVAVERRA
EDPLTALKQFIAGRQGRRTLLLAESAGRRETLQQLLLEHGLKPAASADFAAFLGGDAPLA
LGVAPLQSGFCLDGLAIITETELYAGSPNRRSRQNAQRRASMDNWLRDLTELKVGDPVVH
ESHGIGRYMGLLHLDLGEGDTEFLELHYANEAKLYVPVSQLHVISRYSGNEPDAAPLHSL
GSGQWEKAKKKAAEQARDTAAELLALYAARAARQGHAFAFTENDYEAFADGFGFEETEDQ
ATAIAAVIEDMKSGKPMDRLVCGDVGFGKTEVALRAAFVAVAGGKQVAVLCPTTLLCEQH
YQTFKDRFADWPVQIAELSRFKTAKETAQAMKDLEAGKIDIVIGTHKLLSKEMKFDRLGL
VMIDEEHRFGVRQKEALKALRAEVDVLTLTATPIPRTLAMSLEGLRDFSVIATAPQKRLA
IKTFVAKFSDGIIREAVLRELKRGGQVYFLHNEVDTIDNMREKLQSLVPEARIVVGHGQM
NERELERVMRDFTQQRANLLLCTTIIETGIDNPHANTILINRAEKFGLAQLHQLRGRVGR
SHHQAYSYLLVQDEKALTKQAKQRLEAIQHMEELGAGFYLAMHDLEIRGAGEVLGENQSG
EMQEVGFNLYTEMLNRAVAALKQGREPDLTQPLGVTTEINLHAPALLPDAYAPDVHERLT
LYKRLSNCETEEDINALQEELIDRFGELPPQGQCLLATHRLRLLARPLGIVKLDATASQL
TVQFCPNPPIEPIRIIELIQKNRHFKLAGQDKLAVVRHMPTLKERVDAVKDLFRQLGA
NT seq 3597 nt   +upstreamnt  +downstreamnt
atgaatcttccccggctgcactgcggcgccagcccggccccggcgtcggcaaacggcagc
gccccggccgggccagcgcccctgggctataatcctgcctcccccgcctgcctgatttac
ctcctcgtgtccgcctccacctcgcccgccctgcccgaactgcctcccgaaatttcccgc
gccctggcccagctgccgcgcagcggcgaacgcctgcacctaccgcccctggccggttcc
gccgacgccctggccctggcccggctgggcagccaggcccgcagccagaagcgcctgctg
gccgtgctcaccgccagcccggcggacgcccagcgcctgctggaggaaattccctggttc
gcgccggacctgaaggtgcgcctgctgccggactgggaaaccctgccctacgacaatttc
tcgccccaccacgacctggtctccgagcgcctggccaccctctacgccgtcagccggggc
gagtgcgaagtgctgctggtgccggccaccaccgccgtctaccgcctgactccacccagc
tacctggcggcctacaccttcttcctgaaaaagggcgagaagctggacgccgagcagttc
cgcagccagctcaccctggccggctacacccacgtcacccaggtggtgtcgccgggggaa
tactccatccgcggcggcctggtggacctgttccccatgggctcggccctgccctaccgc
atcgacctcttcgacgaagagatcgagaccctgcgcaccttcgacgccgacacccagcgc
agcctctacccggtgccggaaatccgcctgctgccggcccgggaattccccctggacgac
ggcggccgcacccgcttccgccagcgcttccgcgaagtcttcgaaggtgatccggccaag
tccggcatctacaaggacgtctccaacggcgtcccttccgccggcatcgaatactggctg
cccctcttcttcgaggaaaccgccaccctcttcgactacctgcccaaggacgccgtgctc
tgccagcaccgggacgtggcgcttgccctgcaggacttctggcgcgacacccagtcccgc
tacaacatgctggccggcgacaaggcccggcccctgctgcccccggccgagctgttcctc
tccgaggagcagttcttcgtcgccgccaaggactacgccaagctgatcctgggcaccccg
gcggaaggcatgccgcctctggccaccgccgtccccaccgtggcggtggaacggcgggcc
gaggacccgctgaccgccctcaagcagttcatcgccggccgccaggggcgccgcaccctg
ctcctggccgaatccgccggccgccgcgaaaccctgcagcaactgctgctggaacacggc
ctcaagcccgccgccagcgccgactttgccgccttcctcggcggcgacgcgcccctggcc
ctgggcgtggcccccctgcaaagcggcttctgcctcgacggcctggccatcatcaccgag
accgagctgtacgccggcagccccaaccgccgcagccgccagaacgcccagcgccgggca
tccatggacaactggctgcgggacctgaccgagctcaaggtgggcgacccggtggtgcac
gaatcccacggcatcggccgctacatgggcctgctgcacctggacctgggcgaaggcgac
accgaattcctggagctgcactacgccaacgaggccaagctgtacgtgcccgtctcccag
ctccacgtcatctcccgctactccggcaacgagcccgatgcggcgcccctccacagcctg
ggctcgggccagtgggaaaaggccaagaagaaggccgccgaacaggcccgggacaccgcc
gccgaactgctggccctctacgccgcccgggcggcgcgccagggccatgccttcgccttc
accgaaaacgactacgaggctttcgccgacggcttcggcttcgaggagacggaagaccag
gccaccgccatcgccgcggtgatcgaggacatgaagtcgggcaagcccatggaccgcctg
gtgtgcggcgacgtgggcttcggcaagaccgaagtggccctgcgcgccgccttcgtcgcc
gtggccggcggcaagcaggtggcggtgctgtgccccaccaccctgctctgcgaacagcac
taccagaccttcaaggaccgcttcgccgactggccggtgcagatcgccgaactgtcccgc
ttcaagaccgccaaggaaaccgcccaggccatgaaggacctggaggcgggcaagatcgac
atcgtcatcggcacccacaagctgctctccaaggagatgaagttcgaccgcctgggcctg
gtcatgatcgacgaggaacaccgcttcggcgtgcgccagaaggaggccctgaaggccctg
cgggccgaggtggatgtgctgaccctgaccgccacccccatcccccgcaccctggccatg
agcctggaaggcctgcgggacttttcggtgatcgccacggcgccccagaagcggctggcc
atcaagaccttcgtcgccaagttctccgacggcatcatccgcgaggcggtgctgcgggaa
ctgaagcggggcggccaagtgtacttcctgcacaacgaggtggacaccattgacaacatg
cgggagaagctccagtccctggtgcccgaggcccgcatcgtggtcggccacggccagatg
aacgagcgggagctggaacgggtgatgcgggacttcacccagcagcgggccaacctgctg
ctatgcaccaccatcatcgagaccggcatcgacaatccccacgccaacaccatcctcatc
aaccgggccgaaaaattcggcctggcccagctgcaccagctgcggggacgggtcggccgc
tcccaccaccaggcctactcctacctcctggtgcaggatgaaaaggccctgaccaagcag
gccaagcagcgcctggaggccatccagcatatggaagagctgggggccggcttctacctg
gccatgcacgacctggaaatccgcggcgccggcgaggtactgggggaaaaccagtccggc
gaaatgcaggaggtgggcttcaacctgtacaccgagatgctcaaccgggcggtggccgcc
ctcaagcagggcagggagccggacctgacccagcccctgggcgtcaccacggaaatcaac
ctgcacgccccggccctgctgcccgacgcctacgcccccgacgtgcacgagcgcctgacc
ctctacaagcgcctctccaactgcgaaacggaggaggacatcaacgcactgcaggaagag
ctgatcgaccgcttcggagagctgccgccccagggccagtgtctgctggccacccaccgc
ctgcgcctgctggccaggcccctgggcatcgtcaagctggacgccactgccagccagctg
accgtgcagttctgccccaatccgcccatcgagcccatccgcatcatcgaactgattcag
aaaaaccgtcacttcaagctggccgggcaggataaactggcagtcgttcgtcatatgccg
accctcaaggaacgggtcgatgcagtgaaggatctgttccggcaactgggcgcctga

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