Dermacentor silvarum: 119431853
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Entry
119431853 CDS
T07348
Name
(RefSeq) putative pre-mRNA-splicing factor ATP-dependent RNA helicase PRP1
KO
K12820
pre-mRNA-splicing factor ATP-dependent RNA helicase DHX15/PRP43 [EC:
5.6.2.6
]
Organism
dsv
Dermacentor silvarum
Pathway
dsv03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
dsv00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
119431853
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
dsv03041
]
119431853
03009 Ribosome biogenesis [BR:
dsv03009
]
119431853
Enzymes [BR:
dsv01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
119431853
Spliceosome [BR:
dsv03041
]
Complex A
U2 snRNP components
U2 related factors
119431853
Complex B
119431853
Complex C
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-SnRNP related factors
119431853
Ribosome biogenesis [BR:
dsv03009
]
Eukaryotic type
90S particles
Helicases
119431853
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
OB_NTP_bind
HA2_C
Helicase_C
HA2_N
DEAD
AAA_22
AAA_19
SRP54
nSTAND3
AAA_30
ABC_tran
PhoH
Flavi_DEAD
AAA_25
DUF6682
Motif
Other DBs
NCBI-GeneID:
119431853
NCBI-ProteinID:
XP_037555235
EnsemblRapid:
LOC119431853
LinkDB
All DBs
Position
1:complement(87628214..87710823)
Genome browser
AA seq
731 aa
AA seq
DB search
MSKRHRIDVGDSPVTKKRDRDFDKDYDRDDRSKEKMDNCHNMQSVPVSQQLNALTGLPYS
NRYYELFRKRIALPVWEYRDKFFEYLNNHQILVLVGETGSGKTTQIPQWCVELLRQKGGR
RGVACTQPRRVAAMSVAARVAEEMDVAIGQEVGYSIRFEDCSSPKTLLKYMTDGMLLREA
MSDPLLEAYGVVLLDEAHERTLATDILMGVLKQVVTQRPDLKIVVMSATLDAGKFQNYFD
NAPLMSVPGRTHPVEIFYTPEPERDYLEAAIRTVIQIHMCEEIEGDILLFLTGQEEIEEA
CKRLKREIDNLGPDVGEMKCIPLYSSLPPNLQQRIFEPPPPAKANGAIGRKVVVSTNIAE
TSLTIDGVVFVIDPGFAKQKVYNPRIRVESLLVSPISKASSQQRAGRAGRTRPGKCFRLY
TEKAYKTEMQDQTYPEILRSNLGSVVLQLKKLGIDDLVHFDFMDPPAPETLMRALELLNY
LQSLDDNGELTELGSIMAEFPLDPQLAKMLITSCEYNCSNEALSITAMLSVPQCFVRPNE
AKKAADESKMRFAHIDGDHLTLLNVYHAFKQNHEDTQWCYDNFINYRSMKSADNVRQQLS
RIMDRFNLRRTSTEFTSKDYYINIRKTLVSGFFMQVAHLERTGHYLTIKDNQVVQLHPST
CLDHKPEWVVYNEFVLTTKNYIRTVTDIKPEWLIKIAPNYYDMSNFPQCEAKRQLEMLIA
KMETRQYQEGF
NT seq
2196 nt
NT seq
+upstream
nt +downstream
nt
atgtctaaaagacacagaatagatgtaggagattctcctgtaaccaagaaaagagatcgg
gactttgacaaagactatgatcgagatgaccggagcaaagagaaaatggataactgccat
aatatgcagtcagtgccagtgtcgcagcagctgaatgctctgactgggcttccctactcc
aaccgttactatgagctattccgcaagcgcatagcgctgccagtatgggagtatcgggac
aagttcttcgaatacctcaacaaccatcagattcttgtattggttggcgagacaggatct
ggcaaaacaacacagattccacagtggtgtgtagagcttctgcgccagaagggaggtcgc
cgtggtgtagcatgtacacagccacggagggtagcagccatgagtgttgctgcacgagtg
gcagaggaaatggatgtggctattggccaggaagttggttatagcattcgctttgaggac
tgctcttctccaaagacattgctgaagtacatgactgatggtatgctgctaagagaagcc
atgagtgacccactgcttgaagcctatggtgttgtgctcttggatgaagcccacgaacgt
actttggctacggacattctcatgggggttttaaagcaggtcgtcacccagcgtccagac
ctcaagattgttgttatgagtgccactcttgatgctggtaaatttcagaactattttgac
aatgcaccattgatgagtgtacctggtcggacgcatcctgtggagatattctatacaccg
gaacctgaacgagactaccttgaagcagccattagaactgtcatccagattcatatgtgt
gaggaaattgaaggtgacattctgctatttcttacaggccaagaggaaattgaagaggca
tgtaaacggctgaaaagggaaattgataacttagggccagatgttggagaaatgaaatgc
attcctctgtactcatcattgccaccaaatctgcaacagcgtatttttgagccgccacca
cctgccaaggcaaatggggccattggccgaaaagtagttgtgtcaacaaatattgctgaa
acatccctgaccatcgatggtgtggtcttcgtgattgaccctggttttgccaaacaaaag
gtttacaatcctcgcatccgtgttgagtctctactggtgtcacccataagcaaggccagc
tcacagcagcgagcaggtcgtgctggtcgcacaaggccaggcaaatgctttagactgtac
acagagaaggcatacaagacggagatgcaggaccagacatatcccgagattcttcggtca
aaccttggctcggttgttctccaattgaagaagttgggcattgatgacttggtgcacttc
gatttcatggatcctccagctccagaaacattgatgcgtgcactggagctcctgaactac
cttcagtccctcgatgacaatggtgaactgaccgaattgggatccataatggccgagttc
cccctggaccctcaacttgccaagatgctgatcacatcatgcgaatacaattgttccaat
gaagccctctccatcacagccatgttatcagttccgcagtgctttgtccgccccaacgag
gccaaaaaggctgctgacgagtccaagatgcgatttgcccacattgacggggaccacctg
accttgctgaatgtgtaccacgccttcaagcagaaccacgaagatacccagtggtgttat
gacaacttcatcaactaccgttctatgaagagtgcagacaacgtgcggcagcagctgtca
agaattatggaccgcttcaaccttcgccgaacatctacagagtttactagcaaagactac
tacatcaatattcgcaagactcttgtatccgggttctttatgcaggttgctcacttggaa
aggactggccactatttgacaatcaaggacaaccaggttgtgcagctccacccatcaact
tgtctggatcacaaacctgagtgggtggtgtataatgagtttgtcctcaccaccaagaat
tacattcgtacagtcacagacatcaaacctgaatggttgatcaagattgcacccaactac
tatgacatgtcaaatttcccccagtgtgaagcaaaacgccaattggaaatgctcattgcc
aaaatggagacccggcaataccaggaaggcttctga
DBGET
integrated database retrieval system
