Dermacentor silvarum: 119435932
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Entry
119435932 CDS
T07348
Name
(RefSeq) pre-mRNA-splicing factor syf1 homolog
KO
K12867
pre-mRNA-splicing factor SYF1
Organism
dsv
Dermacentor silvarum
Pathway
dsv03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
dsv00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
119435932
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
dsv03019
]
119435932
03041 Spliceosome [BR:
dsv03041
]
119435932
Messenger RNA biogenesis [BR:
dsv03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Other transport factors
119435932
Spliceosome [BR:
dsv03041
]
Complex B
Other components
Prp19-related factors
119435932
Complex C
119435932
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HAT_Syf1_CNRKL1_C
HAT_Syf1_M
HAT_Syf1_CNRKL1_N
HAT_PRP39_C
HAT_PRP39_N
TPR_14
Suf
TPR_8
TPR_2
Mad3_BUB1_I
TPR_12
ARM_TT21_C
TPR_15
RPN7
ARM_TT21
TPR_10
DHR-2_Lobe_A
PPR
TPR_16
Motif
Other DBs
NCBI-GeneID:
119435932
NCBI-ProteinID:
XP_037558561
LinkDB
All DBs
Position
1:120372717..120492320
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AA seq
845 aa
AA seq
DB search
MKSTKDIVFEEDDLPYEEEIIRNPFSVKHWIRYIDYKKDQPKHVINLICERALRELPGSY
KLWYNYLKLRRQQVRDLCITDPEYEDVNSAFERSLVFMHKMPRIWMDYCKFLTLQQKITR
TRRVFDRALRALPITQHPRIWPLYLEFVNMHDIPETALRVYRRYLKLCPENAEEFVEYLT
RIGRLDDAAVLLADIVNKEDFVSKEGKSKHQLWNELCEMISKNPDKVHSLKVDAIIRGGL
RRYTDQIGQLWNSLADYYIRAGLFERARDIYEEAIQTVLTVRDFTQVFDAYAQFEESVLC
AKMEETSKSKPSEESDLDLELRLARFEDLMDRRPLLLNSVLLRQNPHNVHEWLKRVKLFE
GKPREIINTFTEAVQTIDPKLATGKLNVLWVSFAKFYEENDQIEDARIIFEKATQVPFTK
VEDLAHVWCEWAEMELRHENHEGALKLMQRATAMPSRKAAYHDQSEPVQFRVYKSLKVWS
LYADLEESFGTFKSAKAVYDRIIDLKIATPQIIINYGLFLEENNYFEEAFKAYEKGIALF
KWPNVFDIWNTYLTKFLKRYGGTKLERARDLFEQCLEGCPSKFAKSLYLLYAKLEEEHGL
ARHAMAIYDRGCKAVLPEEQFEMFNIYILKAAEIYGLTHTREIYERAIELLPDTQARLMC
VRFADLERKLGEIDRARAIYAHCSQMCDPRTTADFWNTWKEFEVHHGNEDTMREMLRIKR
SVQAMYNTQVNFMTAQMLSATAREAAAAAGTEEAPKDSMQQLEAAAKLLADEARKDTARM
PGKDILFVRGGTTDDEQSLAERSRTTNPDEISIDDEEGSDDDQQVEEVAVEQRSVPEEVF
GDLKK
NT seq
2538 nt
NT seq
+upstream
nt +downstream
nt
atgaaaagcaccaaggatatcgtatttgaggaagacgatctcccctacgaggaagagatc
attcggaacccgttctctgtcaagcactggatacgctacattgactacaagaaagaccaa
ccaaagcatgttatcaatttgatctgcgaaagagctttacgagagcttcccggcagctac
aagctttggtacaactatttgaaactaagaaggcaacaagtcagagatctctgcataact
gaccctgagtatgaggatgtcaacagtgcttttgagcgatcgttggttttcatgcataag
atgcctcgaatatggatggactactgcaagtttctcaccctgcagcagaaaattacacgc
acacgacgagtgtttgacagggccctccgggctttgcccatcactcagcatcctcgcatt
tggccactttatttggagtttgtcaacatgcacgacattcccgaaacagctcttcgtgtt
taccgccgctaccttaagctctgcccagagaatgctgaggaatttgtggaatacttgact
cgcattggtcgcttggatgatgctgctgtactactggcagatattgtcaataaggaagac
tttgtgtctaaagaaggaaagtctaaacatcagctgtggaatgagttgtgcgagatgatt
tccaagaaccctgataaggtgcactcgctcaaagtggatgccattattcgaggcgggctt
cgccgttacacagaccagattggccagctttggaattccctggctgactactacatccgt
gctggactgtttgagagagcaagagacatttatgaagaagctatacagacggtcctgact
gttcgggacttcactcaggtttttgatgcctacgcccagtttgaagaaagtgtgctctgt
gctaaaatggaagaaactagcaaatcaaagcccagtgaagaaagtgatcttgaccttgaa
ttgcgtctggcacgttttgaggatcttatggatcgaagaccactcctgttgaacagtgtc
ttgctgcgacagaatccacacaatgttcatgagtggctgaagagagttaagctttttgaa
ggaaagcctagagagataatcaacactttcacggaagctgttcaaaccattgaccccaag
ctggccactggaaaactgaatgttttatgggtgtcttttgccaagttttatgaagaaaat
gatcaaattgaagacgctcgaattatttttgaaaaagcaacccaggtgccttttacaaaa
gtggaagacctcgctcatgtatggtgcgagtgggcagagatggaactgcgacacgaaaac
catgaaggagctctaaaactaatgcagagagccactgcaatgccctccaggaaagctgcc
taccatgatcaaagtgaaccagttcaatttcgtgtatataaatcgctcaaagtgtggtca
ctgtatgcagacttggaggaaagttttgggacatttaagtctgcaaaggctgtgtatgac
cggatcatcgatttgaagattgccacgccacagatcatcatcaattatggcctatttctg
gaagaaaacaactattttgaggaagcatttaaggcttatgaaaagggtattgctctcttc
aagtggccgaacgtctttgacatctggaacacatacctgaccaagttcctgaaacgttat
ggtggaaccaaactagagcgggctcgtgatctttttgagcagtgcctcgaaggttgccca
tcaaaatttgctaagtctttgtatcttctttatgccaagctggaggaagagcatggtctt
gcacgccatgccatggccatctatgatcgtggctgcaaagctgtgctgcctgaagaacag
ttcgaaatgttcaatatatacatcttgaaagcagctgaaatatatgggctgacacatact
cgggaaatctatgaacgagccattgagcttcttccagacacccaggctcgactcatgtgt
gtgcgctttgctgaccttgagcgaaagttgggtgaaattgaccgtgctcgagccatatat
gcacactgcagccaaatgtgtgatccacggacaacagctgacttctggaacacatggaag
gagtttgaggtgcatcatggaaatgaggacaccatgagggagatgctgcgcattaagcgc
agcgtacaggccatgtataacactcaggtcaacttcatgacagctcaaatgctgagtgca
actgccagggaagcagcagctgcagcaggcactgaagaggctccaaaagactcgatgcag
cagttggaagcagctgctaagttgttggctgatgaggcaaggaaagacactgcaaggatg
cctggcaaggacatcctttttgtcaggggtgggaccacagacgatgagcagagcctagca
gagcggagccgcactacaaaccctgatgaaatcagcatagatgatgaagaaggctccgat
gatgaccaacaagttgaagaggtagctgtggaacaaagatccgttccagaggaagtattt
ggtgacctcaagaaatag
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