Dermacentor silvarum: 119437077
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Entry
119437077 CDS
T07348
Name
(RefSeq) spliceosome RNA helicase DDX39B isoform X2
KO
K12812
ATP-dependent RNA helicase UAP56/SUB2 [EC:
5.6.2.7
]
Organism
dsv
Dermacentor silvarum
Pathway
dsv03013
Nucleocytoplasmic transport
dsv03015
mRNA surveillance pathway
dsv03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
dsv00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
119437077
09122 Translation
03013 Nucleocytoplasmic transport
119437077
03015 mRNA surveillance pathway
119437077
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
dsv03019
]
119437077
03041 Spliceosome [BR:
dsv03041
]
119437077
Enzymes [BR:
dsv01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
119437077
Messenger RNA biogenesis [BR:
dsv03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
119437077
Spliceosome [BR:
dsv03041
]
Complex C
Other components
EJC/TREX
119437077
Other splicing related proteins
Spliceosome associated proteins (SAPs)
TREX complex
119437077
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Cas3-like_C_2
CMS1
Motif
Other DBs
NCBI-GeneID:
119437077
NCBI-ProteinID:
XP_037560082
LinkDB
All DBs
Position
1:complement(257554122..257621524)
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AA seq
443 aa
AA seq
DB search
MQCEVDDPLDIITDEPDAQRIAMADNDLLDYEDEEDQEPTVGETIPEVKKPTGGYVSIHS
SGFRDFLLKPELLRAIVDCGFEHPSEVQHECIPQAILGMDILCQAKSGMGKTAVFVLATL
QQLDPVEGQVSVLVMCHTRELAFQISKEYERFSKYLPSVRVGVFFGGMNITNDEKVLKSS
CPHVVVGTPGRVLALVRSRKLQLKHIKHFVLDECDKMLEQLDMRRDVQEIFRSTPHEKQV
MMFSATLSKDIRPVCLKFMQDPMEVYVDDEAKLTLHGLQQYYVKLKDNEKNRKLFELLDL
LEFNQVVIFVKTVQRCMALAQLLVEQNFPAIAIHRAMTQEERLSRYQQFKDFQKRILVAT
NLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKGLAVTFVSDEQDAKTLNEVQ
DRFDVNISELPDEIDISSYIEGR
NT seq
1332 nt
NT seq
+upstream
nt +downstream
nt
atgcaatgcgaagtggacgatcccttggatattatcacagacgaaccagacgcacaaaga
atcgccatggctgacaacgacttgttggactacgaggacgaggaagatcaggagccgacc
gtgggtgaaacgatccccgaagtaaagaaacctaccggaggctatgtgtccattcacagc
tcggggttcagggattttcttctcaagcccgaacttttgcgtgccattgtggactgcggc
ttcgagcatccatccgaagtacaacacgagtgcataccccaggcaatcctcggcatggac
atcctgtgtcaggccaagtctggcatgggaaagactgccgtgttcgtcctggctactctg
caacagcttgaccctgtcgaaggccaggtgtctgtgctggtgatgtgccatacccgagag
ctggccttccagatatccaaggagtatgagcgtttctccaagtacctgccgtcagtgcgt
gttggcgtattctttggcggcatgaacattaccaatgatgagaaggtgctcaagagcagc
tgcccacacgttgtggtgggcacacctggcagagtcctggccctagttcgttcccgtaaa
ctgcagctgaagcacatcaagcactttgttctggacgaatgtgacaagatgctcgagcag
ctcgacatgcgtcgggatgtccaggagatctttcgcagcactcctcacgagaagcaggtc
atgatgttcagcgcgacgctgagcaaggatatcagacctgtttgcctcaagtttatgcaa
gacccaatggaggtgtacgtggatgatgaggccaagctgacgctgcacggtctgcaacag
tactacgtgaagttgaaggacaatgaaaagaaccgcaagctgtttgagctgctggacctc
ctcgagttcaaccaggtggtcatctttgtcaaaacggtgcagcgctgcatggctctggcc
cagctgttggtagaacagaacttccctgccattgccatccaccgggcaatgacccaggag
gaaaggttgtcacgctaccagcagttcaaggactttcagaagcggattcttgttgccaca
aacttgtttggacgggggatggacattgagagagttaacattgtattcaactatgatatg
cctgaagactccgacacctacctccacagggttgctcgagcaggacgttttggcaccaag
gggttggcggtgacatttgtatcggatgagcaggatgcaaaaaccttgaatgaagtgcaa
gaccggtttgacgtgaacatctccgagctgcccgatgaaatcgacatttcctcttacatt
gaaggccgctga
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