Dermacentor silvarum: 119446759
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Entry
119446759 CDS
T07348
Name
(RefSeq) LOW QUALITY PROTEIN: regulator of nonsense transcripts 1-like
KO
K14326
regulator of nonsense transcripts 1 [EC:
5.6.2.5
5.6.2.3
]
Organism
dsv
Dermacentor silvarum
Pathway
dsv03013
Nucleocytoplasmic transport
dsv03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
dsv00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
119446759
03015 mRNA surveillance pathway
119446759
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
dsv03019
]
119446759
Enzymes [BR:
dsv01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
119446759
5.6.2.5 RNA 5'-3' helicase
119446759
Messenger RNA biogenesis [BR:
dsv03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
119446759
mRNA cycle factors
Common to processing body (P body) and stress granule
119446759
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UPF1_Zn_bind
AAA_12
AAA_11
UPF1_1B_dom
AAA_30
AAA_19
ResIII
SLFN-g3_helicase
NPHP3_N
UvrD-helicase
AAA_16
ATPase
DEAD
Helicase_RecD
nSTAND3
SRP54
AAA_22
AAA
Motif
Other DBs
NCBI-GeneID:
119446759
NCBI-ProteinID:
XP_037567225
LinkDB
All DBs
Position
3:complement(223038273..223070715)
Genome browser
AA seq
1124 aa
AA seq
DB search
MSMSVDAYGPSSQTLTFLDTEEASDLLGADTQGSEFDFTDFTLPSQTQASQADGGQTQGS
RGGQLPGEVRSNGLEVAAAGQALGELTFEEDEEDQYYAKDLPEHACKYCGIHDPGCVVQC
NVCKRWFCNGRGNTSGSHMVNHLVRAKHKEVTLHRDGPLGETVLECYSCACRNVFVLGFI
PAKADSVVVLLCRHPCAAQSSLKDMNWDPDQWKPLIHDRCFLPWLVRAPLERDQLRARQV
TAQQISRLEELWKDNVDASFQDLEKPGVDEEPQQVLLRYEDGYQYQNIFGPLVKMEADYD
KKLKESQTQDNIEVRWDIGLNKKMIAYFTVAKSDTDMRLMHGDELRLRYLGELHKPWSGV
GHVIKIPDNYSEEVGIEMKTNLGVPSECTSNFVVDFVWKSTSFDRMQAALRKFAVDECSV
SAYIYHRLLGHEVEEVVMRCPLPKHFSAPQLPELNRSQVYAVKHALQRPLSLIQGPPGTG
KTVTSATVVYHLAKQSTGPVLVCAPSNIAVDQLTEKVHQTGLRVVRLCAKSREALNSPVS
FLALHNQIRSMDGHSELHKLQQLKDETGELSSADEKRYRMLKKACERELLEAADVICCTC
VGAGDPRLARFKFHSILIDESMQATEPECMVPVVLGAKQLILVGDHCQLGPVVMCKKAAR
AGLSQSLFERLVVLGIRPLRLEVQYRMHPQLAQFPSNFFYEGSLQNGVFADERRMRGLDF
PWPQPERPMLFYACQGQEEMAGSGTSYLNRTEAALVEKICTRFLRSGVKPQQVGVITPYE
GQRAYLVQHMQFQGALHAKLYQEIEVASVDAFQGREKDLIVMSCVRSNEHQGIGFLNDPR
RLNVALTRARYGLIIVGNPKVLSKQPLWNHLLSFYKENRVLVEGPLNNLKESLIQFSKPR
KLVNTVNPGGHFMSTTVFDAREAMVPGSVYDRSSQLNGGPDWRNTNRGAWAPLKENFPET
AFGRHHDPLAYIGPAERAAANPGLPVPVGLFMNMAHVPPRFYNQHQQALQARRGAAGPAK
GPPPRRTARQQQQPPPGRRAPPGSQFNSQASQGVLSQPGGSGPLSQPGVGALSQLSQESC
FLGEELRSQAEGMLSQDSSYQGDRHCFGQPPSSSTAHFAAQQPY
NT seq
3375 nt
NT seq
+upstream
nt +downstream
nt
atgagcatgagtgtcgacgcgtacggacccagctcgcagacgcttacattcctcgacacg
gaggaagccagcgacttgctgggagccgacacgcagggatcagagttcgatttcaccgac
tttacgttgccttctcaaactcaagcatctcaggcagatggcggacagacacagggaagc
cgtggtggccagcttcctggggaggtgcgcagcaatggcctggaggtggccgcagctgga
caggctctgggcgagcttacctttgaggaagatgaagaagaccagtactacgccaaggat
ctacctgagcatgcctgcaagtactgtggcattcatgatcccgggtgcgttgttcagtgc
aacgtgtgcaagcgctggttctgcaatggtcgaggcaacacatcaggcagccacatggtg
aaccacttggtgcgtgccaagcacaaggaggtgaccctgcaccgagatggccctcttggc
gagacagtgcttgagtgctattcgtgcgcctgccgcaacgttttcgtcctcggcttcatt
ccggccaaggccgactcggtggtggtgctgctttgccgacacccatgcgccgcccagtcc
tccctcaaggacatgaactgggacccggaccagtggaagccgctcatccacgatcgctgc
ttcttgccatggctagtgcgtgcacctctcgagagagaccagctacgtgcccgccaggtg
actgcacagcagatctcgaggcttgaagagctgtggaaggacaacgtggacgccagcttt
caggatctggagaaacctggggtggacgaggaaccccagcaggttctgctgaggtatgag
gatggctaccagtaccagaacatctttggccctttggtcaaaatggaagcagactatgac
aagaagctcaaggagtcgcagacacaggacaacatagaggtccgctgggacattgggctc
aacaaaaagatgattgcctatttcacagtggccaagtctgatacagatatgcggctgatg
catggtgatgagctacggctgcgctatcttggagaactgcacaagccgtggtctggcgtg
ggccacgtcatcaagatccctgacaactacagtgaggaagtaggcattgaaatgaagaca
aacttgggtgtcccatcagagtgcacctccaactttgtggttgactttgtgtggaagtcc
acctcctttgacaggatgcaggccgcactccgcaagtttgccgtcgatgagtgctcggta
tcggcgtacatctaccatcggctgctaggccatgaggtggaagaagtggtgatgcgctgc
ccattgcccaagcacttttcagcgccccagttgccagagctgaaccgctcacaggtgtat
gcagtgaagcacgcactgcagcgaccactgtcgctcatccaaggcccgccaggcacgggc
aagacggtgacgtcggcgacagttgtgtaccacttggccaaacagagcacagggcctgtc
cttgtgtgtgcacccagcaacattgctgtggaccagctaacggaaaaagtgcaccagacg
ggcctgcgggtggtgcggttgtgtgccaagagtagagaggccctgaactcgcctgtctcc
ttcttggctctgcacaaccagatccgcagcatggacggacactctgagctgcacaagctg
caacagctcaaggacgagactggcgagctgtcatcagctgatgagaagcgctaccgcatg
ctcaaaaaagcctgcgagcgtgagctcttagaggctgccgatgtcatctgctgcacgtgt
gttggggcaggagaccctcggctagcgcgcttcaagttccactctatcctcatcgacgag
agcatgcaggccactgagccagagtgcatggtgcccgttgtgcttggggccaagcagctg
atcctggtgggtgaccactgccaactgggccccgtggtgatgtgcaagaaggcagcacgg
gctgggctgtcgcagtcgctatttgagcggctcgtggtactgggcattcggcccttgcgc
ctggaggtgcagtaccgcatgcaccctcagctggcccagttcccatccaacttcttctac
gagggctccctgcagaacggcgtatttgccgacgagcgccgcatgcgtggcctggacttc
ccgtggccgcagccagagcgaccaatgctcttctatgcctgtcagggccaggaggagatg
gcgggcagcggcacctcgtacctgaaccgcaccgaggccgcactcgtggaaaagatctgc
acgcgcttcctgcgcagcggtgtcaagccccagcaggtgggcgtcatcacgccttacgag
ggtcagcgtgcctacctggtgcagcacatgcagtttcagggggctctgcatgccaagctg
taccaggaaattgaggtggccagcgtggacgccttccagggccgagagaaggacctgatc
gtgatgtcctgtgtgcggtccaatgagcaccaaggcattggatttctcaacgacccccga
cggctgaatgtggcactgacacgtgctcgctatgggcttattattgtgggcaaccccaag
gtgctgtcaaagcagcccctgtggaaccacttgctgagcttttacaaggagaaccgagtg
ctggtcgagggtcccctaaacaacctcaaggaaagtctaatccagttcagcaagccacgc
aagctggtcaacacagtgaacccaggtggtcacttcatgagcaccactgtgtttgacgcc
cgggaggccatggtgcccggtagtgtgtatgaccgctcatctcagctgaatggtggacca
gactggcggaacactaaccgtggagcctgggcacccctcaaggagaacttccctgagaca
gcttttggccggcaccacgacccactggcatacatcggtcctgcggagcgggctgcagcc
aatccaggccttcctgtgcctgtggggctatttatgaacatggcacatgttccaccgcgg
ttctataatcagcaccagcaagcactgcaggcacgacgaggggctgctggcccagcaaag
ggtcccccaccccgtcgcacagcccgccagcagcagcagcctccaccagggcgacgtgcc
cctccaggctcgcagttcaacagtcaagctagccagggagtgctgtcccagccgggtggc
agtgggccactgtcgcagccaggagtgggtgccctgtcgcagctgtcgcaggagagctgc
ttcctgggggaggagcttcgctcgcaggccgagggcatgctctcccaggactcatcctac
cagggggacaggcactgttttgggcagccaccctcctcctccacagcccacttcgcagca
cagcagccctactga
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integrated database retrieval system
