Dermacentor silvarum: 119449517
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Entry
119449517 CDS
T07348
Name
(RefSeq) LOW QUALITY PROTEIN: pre-mRNA cleavage complex 2 protein Pcf11-like
KO
K14400
pre-mRNA cleavage complex 2 protein Pcf11
Organism
dsv
Dermacentor silvarum
Pathway
dsv03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
dsv00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
119449517
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
dsv03021
]
119449517
03019 Messenger RNA biogenesis [BR:
dsv03019
]
119449517
Transcription machinery [BR:
dsv03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
119449517
Messenger RNA biogenesis [BR:
dsv03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Pre-mRNA cleavage factor IIm (CFIIm)
119449517
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
CID
zf_PCFS4
Pcf11_C
Pfc11_Clp1_ID
Motif
Other DBs
NCBI-GeneID:
119449517
NCBI-ProteinID:
XP_037568632
LinkDB
All DBs
Position
4:15824300..15896065
Genome browser
AA seq
1724 aa
AA seq
DB search
MEEDVCEEYKSSLLDLTCNSKPLINMLTMLAEENVQQAPRIVRSIEEHLQKVPIEMKLPV
LYLIDSIMKNVGGDYRALFTQNIVSNFCNVFEKGDERMRMQLFKLRQTWVDIFPNKKLFA
LDTRVKQMDPAWPVIAKEPQQTSIHVNPKFLEAKTKGQEQETLEQQAAKLASLNALNKAT
TEKILNAGVPSTEGEQVQRLLLQKQQEFIFLQRQKLQLELQMQQQQLRQKQEAEIRLALQ
TGFEQLLKSLRPPSSAATTRAPTPAPVPVSVAVRPQMPRPSAPVAARDPRLQQRLVPSAD
SNRPPPVSSAAAVQSAQLGSVVVAPSQGTVSNTTSCTPATVSVQASPEKHGNNRLSAREK
HAAIKSPPRKFRIPKTSDRKKDEDDASKNGETEPSSPTKTSPNKSRKSAEDKDERQQHSR
TGSVGKSSSSSSGSSSQGRGGKKARGKNGKGKSEENVRPNGDVEMMDVLPSGDVDMRVQV
EKKRDSGDTAQETPLHKRQRGHAEEGLADFDYRKLPDRPGGIPNASQRGWAQYKAKHPDE
FKSPLRPARENMDVRDEDLRQMQDSVGRGGYHGRGPMQPCVDRFGRPVLRKLMSDPRFRS
HVGQLGSSDMSLQQQQQMYEMLADPDVFLQQTEEQMRAGRLNPDLHRELKAELEKISQFR
KSQPQSPIVPLNWQGGPPGPGFPAWNQPSFGGMNKAVQDLPPLSEPAPAVGTIRVDTKMR
KVQFVDDVAVVLMDGSETRQIMFKGPPKRVFIDDMEPVSLLFDGTAHEFVSKRTGKKRTI
KFGAPLREIFLDGVPYSAQFDNSPIAIKTADGEVHVIRLEPPPPTVDIEKRPSEHILRAL
NLHPEKLADTDSDLRTLPPEVKLPPTESENSMDVDMRLPTAEAAKDVDLRKRGDMDESGA
SWNSPQQAGGGWGQSRPQQPPEGGFQQSKESGGWVRYGSAAEERAAVNSNWTQQPPLGQP
QQDPNIRQPWPPGPGEWNNNFGNDFMAGRGMPGVGPGRRGNQQPGFGGKEYPSYFREDFP
QPPMHPHHVGVGEVRPGFLQPQFPPCRPPFTAGDPGLPPMGTPRLGGPPPPPQALLASSL
APPPPLAPPSMTVTRPHLVGPEAAARGQPVFMVGAGQPQPMQQPLQPPLQQPMQQPMQQP
MQQPMQQPMQQPMQQPMQQPMQQPMQQPMQQPMQQPMQQPMQQPQHAAPVQQPIQQPMQQ
PMQQPLQQPIQQPLTKPPALQTVQSPAMSQMPAVTLPSPFPAVQTDGHTPQQPPSQDPTA
APAQPSALDVNVGELFSKLVAAGILKQSTGNGNAAGSQSAEQYQPMAMGGHLQKKKRRRA
RGEHGRQEPKKPIEGIPLLSFSRTDQLKIKHQSVINALHVGTQCASCGLRFTDEKCEKYR
QHLDWHFRANRRDKDGARKAFSRKWFYEVEDWIQFEEIEDLEERARSFFEQQATVEQDQS
SNSPMAIKSVPASGDETGNTCAVCEEAFQLFWAEEEEQWHFRDAIRIENKVYHPACYEDF
KRAAEAPSPVKMETEEAQAEAVPQEEDKAMDVDPSVKEEAASEATADEKPIDQSVSDEKP
PEEMAVDETAAVAQDGSEGNDGTCDKGGLPIKDDNASGDMQDDPVVVVDNLGEFGVSLSD
VEQNNDEEERPPETVEPKVVVKSTGGIVMKVKAESIQAPISPVSHSTTADVSDTAEGGGS
NEPAPAPDESASDEEFRPPTPDPRFQSLPPVQRGNELSGLCCIM
NT seq
5175 nt
NT seq
+upstream
nt +downstream
nt
atggaagaagacgtctgcgaagagtacaagtcgtcgctgctggatctcacatgcaacagc
aagccgctcatcaatatgctcacgatgttggccgaagaaaacgtccagcaagctccaagg
atagtgcgaagcatcgaagagcacttacagaaggttcccatagaaatgaagctgcctgta
ctatacctaattgattccattatgaagaatgttggaggtgactatcgcgcattgttcaca
caaaacatcgtttccaacttttgcaacgtttttgaaaagggagatgagcgaatgcgcatg
caactcttcaaattgcgccaaacctgggtggacattttcccgaacaagaagctttttgcc
cttgacactcgagtgaagcagatggacccagcatggccagtcatagcaaaggaaccccag
caaacatcgatacatgtcaacccgaagtttcttgaagccaaaacgaaaggacaagagcag
gagacactggaacagcaagcagctaagcttgctagtttaaatgcgcttaacaaagcaact
actgaaaagatcctaaatgctggtgtgccttcgactgaaggggaacaagttcagaggttg
cttctacagaagcaacaggagttcatcttcctgcaaaggcaaaaacttcaactcgagttg
caaatgcagcaacagcaactgcgacaaaagcaagaagctgagataagactggctcttcag
actggctttgaacaactcctgaaaagtctcaggccaccttccagtgcggcgacaacgcgt
gcacctacgcctgctccggttccagtcagtgtggctgtgcgtccgcagatgccacgaccg
tcagcgcctgttgcagcacgtgacccaaggttacagcagcgcctcgtgccatcagccgac
agtaaccgaccaccacctgtttcatcagcagcagcagtacagtctgcacagctagggtct
gttgttgttgctccatctcagggtactgtttcaaacaccacatcctgcacgccagcgact
gtgtcagtgcaggcatctcctgagaaacacggaaacaacaggctatcagctcgggagaag
catgcagccatcaagtctccgcccagaaagttccgcattccaaagacaagcgaccgcaag
aaagatgaagatgatgccagcaaaaacggtgaaactgagccgtcttctccaacaaagacg
tcgccaaacaagtcacgcaagagcgctgaggacaaggacgaacgacagcagcacagcaga
actggcagtgtaggaaaatcatcatcatcttcatcaggttcctcatctcagggcagggga
gggaagaaagctcgggggaagaatggtaagggcaaaagtgaagaaaatgtgaggcctaat
ggtgatgtcgaaatgatggatgtgctgccgtcaggcgatgtggacatgcgtgttcaggtg
gaaaagaaacgtgactctggggacacagctcaagagactccactgcacaagaggcaaaga
ggtcatgcagaggaaggccttgcagactttgactatcgcaagctgcctgatcgtccaggt
ggcattccaaatgcctctcagcgtggctgggcgcagtacaaagccaagcatccagatgaa
tttaaaagcccgcttcgacctgctcgagaaaatatggacgtcagggatgaggatctacgg
caaatgcaggattctgtgggtaggggtggctaccatggccgtggacccatgcaaccctgc
gtggaccgttttggcagacctgtgcttcggaagctcatgtctgacccaaggtttcgtagc
cacgtgggccagttgggcagcagtgacatgagccttcagcagcagcagcagatgtatgag
atgttggccgaccccgacgtgttcctgcaacagactgaagagcaaatgcgggcaggacgc
ctcaaccctgacttgcatcgggagctcaaggcagagctggagaagatctcccagtttcga
aagtcacagccgcagtcacccatcgtgcctcttaattggcaagggggacctcctgggcca
gggtttccagcctggaaccagccttcgtttgggggcatgaacaaagctgtccaagaccta
cctcctttgtcagagcctgctccagctgtgggcaccattagagttgacaccaaaatgcgc
aaagttcagtttgtggatgatgtcgctgtggtgctcatggatggcagtgagacaagacag
atcatgttcaagggaccaccaaagcgtgtcttcattgacgacatggaacctgtcagtttg
ctatttgatggcacagcacatgaatttgtttcaaaacggactggaaagaagcgcacaatc
aagtttggagcaccactacgtgaaatcttcctggatggtgtcccgtatagtgcacagttc
gacaacagtccaattgcgatcaaaacagccgacggtgaggtgcatgtgatcaggctagaa
ccaccacctccaactgtggacattgagaaacgaccgtcggagcacatactccgcgccctc
aacttacatcccgaaaagctggccgacactgattcagacttgcgcaccctccctcctgaa
gtgaagcttcctcctaccgagagcgaaaacagtatggacgttgatatgcgactgcctaca
gctgaagcagcaaaagacgtggacctcaggaaacggggtgacatggatgaaagtggtgca
tcgtggaatagtccacaacaggcagggggtggttgggggcagtcacggcctcagcagccg
cccgaaggtggttttcagcagagcaaagagagtggtggttgggttaggtatggaagtgcg
gctgaagagcgcgcagctgtcaatagcaactggacacaacagccgcccctcggtcagcca
caacaggatccaaatattcgtcagccttggccgccagggcctggagagtggaacaacaac
tttgggaatgatttcatggcgggtcgtggcatgccaggagttggcccaggtaggaggggc
aatcagcagccaggctttggtggcaaggagtacccctcatacttccgggaggactttcct
cagcctccgatgcatcctcatcatgttggtgttggagaagttcgtccgggcttcctgcag
ccacagttcccgccatgcaggccaccttttactgctggggatccaggccttcctccaatg
gggacacctcggcttggcggacccccgccaccccctcaggcccttcttgcatcaagctta
gcacctcctcctccgcttgcaccaccctccatgacggtgaccaggccacacttagtgggg
cctgaggcagcagcccgagggcagcctgtattcatggttggagcaggccagccgcagcca
atgcagcagcccctacagccgccacttcagcagccaatgcaacaaccaatgcaacaacca
atgcaacaaccaatgcagcagccaatgcagcagccaatgcagcaaccaatgcagcaacca
atgcagcaaccaatgcagcaaccaatgcagcaaccaatgcagcaaccaatgcagcaacca
atgcagcagccgcagcatgcagcaccggtgcagcagccaattcagcagccaatgcaacag
ccgatgcaacagccacttcagcaacctattcaacaacctctgacaaagccgcctgctttg
cagacagtgcaatcaccagctatgtcacagatgccagcagtcactctgccaagccccttc
ccagcagtgcagacggatggccacacacctcagcagccaccatcacaagatccaactgct
gcaccagctcagccatcggccttggatgtgaacgtgggcgaactcttctccaagctggtt
gctgcaggcatcctcaagcaaagtacaggcaatgggaatgcagccggaagccagtctgca
gagcagtaccaaccaatggcaatgggtggccacttgcagaagaagaaaaggaggagggcg
cgaggagagcacggtagacaggagccgaagaaacctatcgaaggcatcccactgctcagt
ttctccaggacagaccagctcaagatcaagcatcagagcgtgatcaatgccctgcatgtg
ggcacccagtgtgcctcctgcggtctgcgcttcacggacgagaagtgtgagaagtatcga
cagcacctggactggcacttcagggccaatcgcagggacaaggatggcgcccggaaggcc
ttctcccgcaagtggttctacgaggtggaggattggattcagtttgaagagatagaagat
ctggaagaaagagcgaggagcttctttgagcagcaagccaccgtggaacaggaccagagc
agcaactcgcccatggcaatcaagagtgtccctgcttctggagatgagactggcaatacc
tgtgctgtctgtgaagaggctttccagcttttttgggcggaagaggaggagcagtggcac
ttcagggatgccattcgcatcgagaataaagtgtaccatccagcctgctatgaagacttc
aaaagggcggcagaagcacctagtcctgtcaaaatggagactgaagaagctcaggccgaa
gctgtccctcaagaagaagataaggccatggatgtcgaccccagcgtcaaggaagaagct
gccagcgaagcgacggctgatgagaagcccatcgaccagagtgtctccgacgaaaagccg
cccgaggaaatggcagtggacgaaactgctgccgtagcacaggacggctctgagggtaac
gatggtacttgtgataaggggggattgccaataaaagatgacaatgctagcggcgatatg
caggacgatcccgtagtggtagttgataatcttggggagtttggggtgtctctgagtgat
gttgaacagaacaatgacgaagaggagcgcccgcctgagacagtcgagccaaaggttgtg
gtcaaaagcactgggggcattgtgatgaaagtgaaagcagagagcattcaggcaccgatc
tctcctgtgtctcactctacgactgccgacgtgtctgacactgcagagggcggtggcagc
aacgagccggcacctgcacccgacgagtcagcaagtgacgaagagttccgcccacccact
cctgatccacgttttcagtcactgccgccagtgcaaagggggaacgagttatcagggctt
tgctgcattatgtga
DBGET
integrated database retrieval system
