Dermacentor silvarum: 119449604
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Entry
119449604 CDS
T07348
Name
(RefSeq) LOW QUALITY PROTEIN: THO complex subunit 2-like
KO
K12879
THO complex subunit 2
Organism
dsv
Dermacentor silvarum
Pathway
dsv03013
Nucleocytoplasmic transport
dsv03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
dsv00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
119449604
09122 Translation
03013 Nucleocytoplasmic transport
119449604
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
dsv03019
]
119449604
03041 Spliceosome [BR:
dsv03041
]
119449604
Messenger RNA biogenesis [BR:
dsv03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
TREX complex
119449604
Spliceosome [BR:
dsv03041
]
Complex C
Other components
EJC/TREX
119449604
Other splicing related proteins
Spliceosome associated proteins (SAPs)
TREX complex
119449604
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Tho2
THOC2_N
Thoc2
TMEM215
Motif
Other DBs
NCBI-GeneID:
119449604
NCBI-ProteinID:
XP_049521286
LinkDB
All DBs
Position
4
Genome browser
AA seq
1483 aa
AA seq
DB search
MASRVVSLDVCKSWERSGKLEFIKLCRSAAAGMQTSRLPSDRGGRELQLLLHDLCWHVVE
DRLKVDQALAALAEVTALHPEISSMLVDLVFLLDFETLSGDNRDQRDRFHWLLAGCAKVV
PDALLKERIEIESLGDAGIVRNSRTTGTKFVKIKTRLFYKQNKYNLFREESEGYAKLATE
LSQEITGKISPDYMIEVMRSLIGCFNLDPNRVLDIVLEAFECRIHLEDFFVPLLTKFLCN
PATISQVLGFKFTFYQGEAGEPTPLSLYRLAAVLIRNEVIALDDLYSLLLPDDXSLAKQH
KKEENAALQYAKRSAMVIMSSEKKEEEKKDEDKDDDLTLEENQKLGLCEALLEVGDWLNA
EKLMQRLPEHYAVSQPHIARRLCLLVHTLVEPLYSKHSGLPEGFRRPYNPPSGGLRPLPL
VETFSEFQTLVLPMLMSLGPLMHIDPVLIVKVVRLGRAFLHQKGSTTADLRFDLLTLLGE
TLLPSLSLLDCNCCVADEIWSLVKLYPYQQRYLLYHHWKNSSYKSHPLLIRVKADSLKKI
KYIMKRLSKENVKPSGRQIGKLSHSNPCFLFDYILSQIQTWDNLIVPVVDSLKYLTMLSY
DVLAYCVVEALSSPEKDRMKHDGTSISMWLQSLASFCGAVFKKYSIDLTGLLQLVANQLK
AERSLDLLVLKEIVQKMTGIESTEQATQDQLEAMCGGELLKAEGGYFHQLRNTKKSSQRL
KDSLLEQDLALPLCLLMAQQKNCILYREQEASHLKLVGKLYDQCQDTLVQFCSFLSSSLS
TEEYAGRLPSVDQLLSRFHVQADVSFFLARPMFGHQINLKFDEAKRKDKSFKTMAAAQKL
QRYVDAVDQVMSQVVENIRPLHPAKTWEDLSPQFYVTFWSLSMYDLHVPTSSYQREMQKL
RDASNSEETKDMAPSKRKKEKDRCDALADKLAEEERKQQEHCTRVLARLRSEKDAWFQSR
SSKNETIMQFLQLCVFPRCTFTALDALYCAKFVHLIHILKTPNFSTLICYDKIFCDITYT
VTACTENEANRYGRFLCSMLETVMRWHSDKAIFDKECANFPGFMTKFRGASQSSDIATDH
VDYENYRHVCHKWHFKITKALVICLESGDYVQIRNSLIVLTKVLPHFPVMTNLGQALERR
IEKIRQEEKDKRPDLFVLATGYAGQLKNKKPDLIPEHEFHVKDSKEGRAAGSSQVKASDP
VAQLRTAAGLSSGGGGDTQKERKAEAMARVSPQPGTVVSKSASVNAAGSGINSSSSTSSS
KTSSTARRESSRSANKESSGDSHDKVAGTLAERKSALQHDDPRLSKDDMHKSDHWSETSE
EHKRRRLDAASNSVTSGGGSGSKVGGSPRAATGGRGGSSQQSPKVVDDLSSKVASTGEDL
RSSSEKWAHPKDPHDGDKAKVKKGSRKRDHSEESAPEGKRKKDEDSAKSSSKRNGEDVKE
KDRYRREEVSPKIRGERRADRDDKKHHRSSSSSSASAKKRSSF
NT seq
4452 nt
NT seq
+upstream
nt +downstream
nt
atggcgagccgggttgtgtctttagacgtttgtaaaagttgggaaagatcaggaaaactt
gagtttatcaagttatgtcgttcagcagcagccggtatgcagacgtcgaggttgccttca
gacagaggcgggagggagctgcagttgctgttacatgacctatgctggcacgtggtggag
gaccgtctcaaggtggaccaggccctggcggccctagccgaggttaccgcattgcatcca
gagatctcctccatgctggtggacctggtcttcctactggacttcgagacgctgtccggg
gataaccgagaccagagggaccgtttccactggcttctggctggctgcgccaaggttgtt
cctgatgccttgctgaaagaaagaatagagatcgagtccttgggtgatgcagggattgtc
aggaacagccgtacaacgggcaccaaatttgtcaagatcaagacacggctgttttacaag
caaaacaagtacaacttgtttcgagaggaaagcgagggctacgcaaagctagccacagag
ttgagccaagagatcaccggcaaaatcagtccagactacatgattgaggtcatgaggtct
cttataggctgcttcaacctggatcctaacagagttctggatattgtattggaggctttt
gagtgtcgcattcatcttgaggacttcttcgtgcctctgctcactaagttcttgtgcaat
ccagccaccataagccaagttcttggcttcaagttcacattttaccagggagaagctgga
gaaccgacaccattgtctttgtaccgcctggctgcagttttaatccgtaatgaagtcatt
gccctggatgacctttactctctactgctgccagatgatngcagcttggccaagcaacac
aagaaggaggaaaatgcagccttgcagtacgcaaaacgctcggcaatggtgatcatgtcc
tctgagaagaaagaggaagaaaagaaagacgaggacaaggatgatgacctgacattggag
gagaaccaaaagcttggcctgtgtgaggctctgctagaggtgggcgactggctcaatgct
gagaagctgatgcagcggctgcctgaacactacgctgtgtctcagccgcacattgcccgt
cggctgtgccttctggtgcacactctggtggaaccactgtactccaagcacagtggactg
ccagagggtttccgccgaccatacaatccgccatcaggaggcctgcgtccactgccccta
gtggagacgtttagcgaattccagacactggtgctgcccatgctcatgtctctgggtcct
ctgatgcacatagatcccgtgctgatagtgaaagttgtgcgtctgggacgggctttcctt
caccagaaaggctccaccactgcagaccttcgttttgacctgctcacattgcttggagag
actctgctgccatctctgtcgctgctcgactgcaactgttgtgttgctgatgagatctgg
tctcttgtgaagctctatccgtaccagcaaaggtaccttctttaccatcactggaagaat
tcttcctacaagagtcatcctcttctcatcagggtgaaagcagactcactcaagaagatt
aaatacatcatgaagcgtctaagtaaagagaatgtgaagccttcaggccgtcagatagga
aagctgagccacagtaatccctgtttcctcttcgactatatcctgtctcagatccagact
tgggacaacctcatagtgccagtggtggactctctcaaatacctcactatgctgtcttac
gatgttcttgcctactgtgttgttgaggctctttcctcacctgaaaaggatcgcatgaag
catgatggcaccagcatctcaatgtggctgcagagcctcgccagcttctgtggagctgtc
ttcaagaagtactccattgacttgacagggcttcttcagcttgtggctaaccagctgaag
gctgagagaagcctggacctgctggtactcaaggaaatagtgcagaaaatgactggcatt
gagtctactgagcaggccactcaagatcaactggaggctatgtgtgggggagagctcctc
aaagcagagggaggctacttccaccagttgaggaacaccaaaaagtcgtcgcagcggctg
aaggattcattgcttgagcaggacctggcgcttcccctgtgtttactcatggcccagcag
aagaattgcatcctttacagagagcaggaggcctcgcacctgaagctagtcggcaagctg
tatgaccagtgccaggacacgcttgtgcagttctgcagcttcctctcaagcagcctgagc
acggaagaatatgcaggaaggctaccttcagtggaccaactcctgtcaagatttcatgtg
caggcagatgtgtctttctttctggcaaggcccatgtttggacaccagatcaatctcaag
tttgatgaagcgaagaggaaagacaagagcttcaagaccatggctgctgctcaaaagctc
cagcgctacgtagacgccgtggaccaagtgatgtcccaagtcgttgagaacattaggcca
ctgcatcctgcaaagacatgggaagacctgagcccgcagttctacgtgaccttttggtcg
ctgtccatgtatgacttgcacgtccctacatctagctaccagcgtgagatgcagaagctg
agagatgcatccaattctgaagagacaaaggacatggctcccagcaaacgcaagaaggag
aaagacaggtgtgatgccttagccgacaaactggccgaggaggagcgcaaacagcaggag
cactgcactcgagttctggctcgactgcgtagtgagaaggatgcctggtttcagtcaagg
tcatccaagaacgagacaatcatgcagttcctgcagttgtgtgtgtttccacgctgcaca
ttcacagcgttggatgccttgtactgtgccaagtttgttcatttgatccacatcctcaag
acacccaacttttctaccctcatctgctatgacaagatcttttgtgacatcacatacact
gtaacagcatgtacagagaatgaggccaataggtatggtcgcttcctttgctccatgttg
gaaacagtgatgcgctggcacagtgacaaggccatctttgacaaggagtgtgccaacttc
cccggtttcatgaccaagtttcgtggtgctagccagtcatcggacattgccactgatcat
gttgactatgagaactacagacacgtctgtcacaaatggcacttcaagatcacaaaggca
ctcgtgatctgcctagaatctggtgactatgttcaaatccggaacagcttgattgtgctc
accaaagtgctacctcattttcctgtgatgactaatttgggccaggcgctggagaggcgc
atagagaagattcggcaggaagagaaggacaagcggccagacctttttgttctggctacc
gggtatgccggccagctgaaaaacaagaaacctgatttgattcctgagcacgaattccat
gtgaaggacagcaaagaggggcgagcagcaggttcttcccaggtcaaagcatctgaccct
gttgcgcagctccgaactgcagcaggcttgtcctctggtgggggtggagacactcagaag
gagagaaaagcagaggccatggcgagagtgtcaccacagcctggaacagtggtatcaaaa
tcggccagcgtcaacgctgcaggctcagggataaacagcagcagcagtacctcatcttcc
aaaacaagctcaactgcgcgccgggaatccagccggtcagcgaacaaggagagcagtggt
gatagtcatgacaaggttgctggcacactggctgagcggaagagtgccttgcagcatgac
gaccctcggctgtccaaggatgacatgcacaagagtgaccattggtcagaaactagtgaa
gagcacaagcgtcgacggttggacgctgcaagcaacagtgtgacctcgggaggtggcagc
ggtagcaaggtagggggcagcccacgggctgccacgggtggccgtggtggctcctcccag
cagagccccaaggtggtggacgatctctcgagcaaggtggcctccactggggaagaccta
cgctcttcgtctgagaagtgggcccatccgaaggacccgcacgatggggacaaggccaag
gtcaaaaagggcagccgcaagcgagaccactcagaggagagtgcccctgaaggcaagcgc
aagaaggatgaagactctgccaaaagctcgagcaagcgcaatggagaggatgtcaaggag
aaggatcgctataggagggaagaggtgtcgcccaaaattcgtggggaacgacgagccgat
cgggacgacaagaagcatcatcgttcgagtagcagcagttcagcatctgcaaagaagagg
tcatcattctga
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integrated database retrieval system
