Dermacentor silvarum: 119457598
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Entry
119457598 CDS
T07348
Name
(RefSeq) polyadenylate-binding protein 4-like
KO
K13126
polyadenylate-binding protein
Organism
dsv
Dermacentor silvarum
Pathway
dsv03015
mRNA surveillance pathway
dsv03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
dsv00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
119457598
09123 Folding, sorting and degradation
03018 RNA degradation
119457598
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
dsv03019
]
119457598
03041 Spliceosome [BR:
dsv03041
]
119457598
Messenger RNA biogenesis [BR:
dsv03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
eIF4F and regulatory proteins
119457598
mRNA cycle factors
Stress granule specific factors
119457598
Spliceosome [BR:
dsv03041
]
Complex C
Other components
Complex C specific factors
119457598
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RRM_1
MLLE
RBD_DEAH11
RRM_7
RRM_5
RBD_RDR6
RRM_occluded
TEX47
Motif
Other DBs
NCBI-GeneID:
119457598
NCBI-ProteinID:
XP_037575142
LinkDB
All DBs
Position
7:complement(16312838..16318558)
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AA seq
682 aa
AA seq
DB search
MNPSGPNYPMASLYVGDLHPDVTEAMLFEKFSTAGPVLSIRVCRDMITRRSLGYAYVNFQ
QPADAERALDTMNFDPIKSKPIRIMWSQRDPSLRKSGVGNVFIKNLDKTIDNKAMYDTFS
AFGNILSCRVATDEEASSKGYGFVHFETEEAANKAISKVNGMLLNNKKVYVGKFIPRKER
EKMLGDKARCFTNVYIKNFGDELDDEKLMVIFEKFGKITSAKVMTDENGKNRGFGFVSFE
DPECAERAVDELNGKEMGGRVLYVGRAQKKAERQSELKRHFEQLKQERLNRYQGVNLYVK
NLDDALDDERLRKEFAPFGNITSAKVMTDGNGRSKGFGFVCFSSPEEATKAVTEMNGRIV
VSKPLYVALAQRKEDRKAHLASQYMHRIAGMRMQMGQMFPPGGAGAAGYFVPTMPHQTAQ
RSYFPATLGPAQMRATPRWTGQQQQLRGPGGPQAGAGGPQGGQPQGGFPTGLPYQRQPRP
SLATQPQRGALGSARPITGGQQAPPPQQAPPQQAPSAPRVMGPRPAGLAPQTAGGPRPTY
KYTQSMRNPPQVQPVSAPVTAPFQVSAQQQQQVAAAAAAAQQVSQTQQAAVHIQGQEPLT
ASMLAEATPHDQKQMLGERLFPLIHRMYPDLAGKITGMLLEIDNSELLHMLEHHESLKAK
VEEAVAVLHAHQAKENVTMKKE
NT seq
2049 nt
NT seq
+upstream
nt +downstream
nt
atgaaccccagtggcccaaactacccgatggcttctctctacgttggcgacctgcacccg
gatgttacagaggcgatgctgttcgagaaattttccacagcgggtcccgtgctttcgatt
agggtctgcagagacatgatcactcgacgatccctcggctacgcatatgtcaacttccag
cagcccgctgatgcggagcgcgccctggacacgatgaacttcgaccctatcaaaagcaag
ccgatccgtatcatgtggtcacagcgagacccatcgctgcggaagtctggggttggaaat
gtgttcataaagaacctggataagaccattgacaacaaggccatgtacgacacattctct
gctttcgggaacatcctgtcttgtcgagtggccacagacgaagaagcttcctcaaaggga
tatggttttgtccatttcgagaccgaagaagcagccaacaaggctatcagcaaagtaaat
ggcatgctgctcaacaacaagaaggtctatgtgggcaagttcatcccccgcaaggagcgc
gagaagatgcttggcgacaaggctcgatgcttcaccaatgtgtacataaagaattttggt
gatgagctcgacgatgagaaactcatggtcatttttgagaagtttggcaagatcaccagt
gccaaggtgatgacagatgagaacggcaaaaaccggggctttggctttgtctcgttcgag
gaccccgagtgcgctgagcgcgctgtggatgagcttaatggcaaggaaatgggcggtcga
gtgctgtacgttgggcgtgcccagaagaaggcagagcgccagtcggagctgaagcgtcac
tttgaacaactgaagcaagagcgtctgaatcgctaccagggcgtcaacctgtacgtcaag
aacctggacgatgccctggatgatgagcgcctccggaaggagttcgctccttttggcaac
attacaagtgccaaggttatgacagatggcaacggacgctccaagggctttggatttgtc
tgcttcagttcaccagaagaggcaacaaaggctgtgacggaaatgaatggccgtattgtg
gtctccaaaccactttatgttgctctggcccagcgcaaggaagaccgcaaggcacatctt
gcctcacagtacatgcaccgcattgcaggcatgcgcatgcaaatgggacagatgttccca
ccaggtggtgcaggtgcagcaggctactttgtgccaaccatgccccaccaaactgcccag
cgcagctacttcccagccaccctgggcccagcccagatgcgtgccacacctcgatggaca
ggccagcagcagcagctgcgtggacccggaggaccccaggcgggggccggtggaccacag
gggggccagcctcagggaggcttccccactggactgccataccagcggcagccacgccct
tcactggcaacacaaccacagcggggagccctcggcagcgcacggccaatcacgggtggt
cagcaggctccacctccgcagcaggccccaccacagcaggccccgtcggcaccccgggtg
atgggcccacgccctgcgggtcttgcccctcagactgctggtggtccacgcccaacctac
aagtacacccagtctatgcgcaacccaccccaggtccagcctgtctcggcacccgtgacg
gctccattccaggtgtctgctcagcagcagcaacaggtggccgcggctgcagcggcagcc
cagcaggtgtctcagacgcagcaggcagcagtgcacattcaaggccaggaacccctgacc
gcttccatgctggctgaggccacaccacatgaccagaagcagatgctgggcgaacgcctg
ttcccactgatccatcgcatgtatccggacctcgctggcaagatcactggcatgttgctc
gagattgacaattctgaactccttcacatgctcgagcaccacgagtcgctcaaggccaag
gtggaagaagccgttgcagtgctgcacgcccatcaggccaaggagaatgtgaccatgaag
aaagagtag
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