Dermacentor silvarum: 119461027
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Entry
119461027 CDS
T07348
Name
(RefSeq) LOW QUALITY PROTEIN: regulator of nonsense transcripts 2-like
KO
K14327
regulator of nonsense transcripts 2
Organism
dsv
Dermacentor silvarum
Pathway
dsv03013
Nucleocytoplasmic transport
dsv03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
dsv00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
119461027
03015 mRNA surveillance pathway
119461027
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
dsv03019
]
119461027
Messenger RNA biogenesis [BR:
dsv03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
119461027
mRNA cycle factors
P-body specific factors
119461027
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
MIF4G
Upf2
Motif
Other DBs
NCBI-GeneID:
119461027
NCBI-ProteinID:
XP_049528313
LinkDB
All DBs
Position
8:37135743..37195670
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AA seq
1276 aa
AA seq
DB search
MLGQSFWSLEMHLQDSEKKTEVKGKSWRREREERGRRLQARALQAEKNDQKCAVPCSNNV
PPGAGGDAKQENDAISANDNSGDMVSKRADSLPPEEPSEEVALSSVEDDAAAVEESEKAL
LDAYTAEIQERLNFKSELRSKNLTAAGNRPEEAFFSRLDSNLRKNTAFVKKLKTISEAQR
DSLLKDMAGLNLTKYISEVAAAIVEAKLKMSDIQTAVIVCSSLHQRYAEFSTQLLENWLK
ALPLKKDDKATNLSKIRVDLRFFAELLACGVFTQKEGLPVLRNLLTFLTSSDREEHNNLN
ILISFCKHCGEDFAGLVPRRIRILAQKYIRDVPISDLLTPDKQKSLQSILREYYRSLCRH
LLRDHQNLRGIEAHNRRVLQTKGELSGEQKEKCEAAHLAFQKLLTGTQQFADVLDEDVPD
LPLEEIATLETDAATLDIHNRFKGGELDGSSSLWEDEESRSFYENLPDLKAFIPGILFKD
SVQATTSTVSSVEESADLSLEEDLQKLEMECALEIEEERENARLDNGCKVEEKDLTETLL
QEIEAPDEEPAPGTGPGTANKLLLDGFLNSLLHCVSREMVDQAAEQFCMSLNTKPNRNKL
IKALFLVPRTRLDLLPFYARFVATLAPCMPDVANDLVSMLKQDFKFHLKKKDQINIESKV
KTMRFIGELVKFNIFPKSDALYCLKNLLLDFSHHYIEMACNLLETCGRFLFRSPESHQRT
KVYLEQMMRKKAVQALDSRYITMVENAFYYCNPPEAPMSVRPVRPPLHEYIRKLLYKDLA
KSNTEKILRQMRKLDWEDPDVSAYATKCLVAIWHVKYYNIRCMANLLAGLVAYHETVGPQ
VVDGVLEDIRLGMEVNHPKYNQRRVSVVHYLGELYNYRMVESSVIFKVLYSFITFGVNVN
GSPSALDPPDNLFRIRLVCILLETCGQYFNTGSSKRKLDCFLVFFQQYYWQKKSADAYGE
ENLFPITVDYLVKDTLLPLRPKMKLCESVEEATAAVEDLLSELKPKLSEYLSPPAADGED
GDANKAKELENLSPIQEVEEEPDDENHSGECSDQDGDAEGDGDTDVYSGSQSQPLEDDVG
SSTEDEAGNLDEDPGSSQQDVTLVGQRPRRAPCPEDDDFMAAFDKMLSESILHRSQDSVK
PQADIVIPMSLKGTGQQKKTYSNLLEKKGEEDKNTMNFILMTRKGNKPQFKSLEVPVSSE
LAQNLKDREEAERAEKEQVKMLTLNINERQEEEDYQEMLAAQQRPVVLNLNRDRRHKYQH
PKGAPDADLIFGNKKR
NT seq
3831 nt
NT seq
+upstream
nt +downstream
nt
atgctggggcagtccttctggagcctagagatgcacctgcaggactcggagaagaaaacg
gaagtcaaaggcaagagctggcgcagagaacgggaggagagaggtcgacgactgcaagcc
agggctttgcaagctgaaaaaaatgaccagaaatgtgcggttccgtgtagcaataacgtt
ccacccggtgccggtggcgatgctaaacaagaaaatgatgccatctctgccaatgacaac
tctggtgacatggtgtcgaaacgggcggacagcctgcccccagaagagccatcagaagaa
gtggctctcagctcagttgaagacgatgctgctgctgtggaagaaagtgaaaaggctctc
cttgatgcatacacggcagaaattcaagagagactgaacttcaaatcagaacttcggagc
aagaatttgacagctgccggcaatcgtccagaagaggcattcttcagcaggcttgactcg
aatctgcggaaaaacacagcttttgtaaaaaaactgaaaactatctcagaagcccagcgg
gactctctcctgaaggacatggccggcctgaatctgaccaagtacatcagtgaagtggcg
gctgccatagtggaggccaaactcaagatgtctgacatccagacagctgtgattgtgtgt
tcatctttgcaccagcgatatgcagagttctcgacacagctgcttgaaaactggctcaag
gcgctccctctgaagaaagacgacaaggctactaatctgagtaagatcagagtggacttg
agattctttgctgagctgcttgcctgtggagtgtttactcaaaaggaaggtctgccagtg
ctaagaaacctacttacatttctaacaagtagtgaccgtgaagagcacaacaacctaaat
atccttatcagcttctgcaagcattgtggcgaggactttgcaggattggttcctcgcagg
attcgcatcctcgctcagaagtacattcgtgacgtcccgataagcgaccttttgaccccg
gacaagcagaagagtctgcagagcatcttgcgcgagtactaccgttcactctgccggcac
ctgctgcgtgaccaccagaatcttcgtggcattgaggcacacaatcgccgcgttctgcag
acaaagggcgaactcagtggagagcagaaggagaagtgtgaagctgctcacctggccttc
cagaaactgctcacaggaactcagcagtttgcagatgttttagacgaagatgttcctgac
ttgccacttgaagaaattgctacactggagactgacgctgctacccttgacatccacaat
cggttcaagggcggagagctggatggaagcagttcgctgtgggaagacgaggagtcgcgc
agtttttatgagaatctccctgatctcaaggcatttatacctgggatcttgttcaaggac
agcgtacaggctaccactagcacagtttcgtctgtagaggagtctgctgatctgtctttg
gaagaagatttgcagaagttggaaatggagtgtgccctcgagatcgaagaggaaagggaa
aatgcccgcctggacaatggctgtaaagtagaggagaaagacttaactgagacgttgctg
caggaaattgaagcgcctgacgaggagcccgcacctggcactgggccaggcactgccaac
aagcttctcttggatggctttctgaactcgttacttcactgtgtcagccgggaaatggtt
gatcaggctgcggagcagttctgcatgagccttaacaccaagcccaatcgtaacaagcta
atcaaagccctgttccttgttcccagaacaaggctggacctgttacccttctatgcccga
tttgtggccacccttgctccatgcatgccagatgtggccaatgaccttgtcagtatgctg
aaacaggacttcaagttccatctgaaaaagaaagaccaaataaacattgagtccaaagtg
aagacgatgagatttataggagaacttgtgaaattcaacattttccccaagtcggacgcc
ctctactgtttgaagaaccttctcctagactttagccatcactacattgagatggcttgc
aacctccttgagacctgtggtcgttttctgttccgatcacctgaatcgcatcagaggacg
aaagtttacttggaacaaatgatgcgaaagaaggctgttcaagcgttggatagccggtac
atcaccatggttgagaatgctttctactactgcaatccccctgaagcacccatgtctgtt
cgtcctgtacgaccaccactgcatgagtatattcgcaagcttctttacaaagaccttgca
aagagcaacactgaaaagatccttcgtcagatgcgtaagctggactgggaagatcctgac
gtgtctgcctacgccaccaagtgtctagtggccatctggcatgtcaagtactacaacatt
cggtgtatggccaacctactggcgggcctggttgcatatcacgaaacagtgggcccgcag
gttgtggatggtgttctggaagacatcaggcttggaatggaggttaatcacccaaagtac
aatcagcggagagtgagtgtggtgcactaccttggcgagctttacaactaccggatggtt
gagtcatcagtcatctttaaagttctctactctttcatcacctttggtgtcaacgtcaac
gggtctccaagtgccttggatccgccagacaacctcttccgcataagactggtctgcata
ctgcttgagacctgcggacagtacttcaacacagggtcttccaaaaggaagctcgattgc
ttcctggtcttcttccagcaatattattggcagaagaagtcagctgacgcgtacggggag
gaaaacctcttccccatcacagtggactaccttgtcaaggacacactgcttccactccgg
ccaaagatgaaactgtgcgagagcgttgaggaggctacggctgcggttgaagatctcttg
tccgagctcaagcccaagctgtctgaatacctgtctcctcctgcagcagatggtgaggat
ggcgacgccaacaaagccaaagagttagaaaacctcagcccgattcaggaagtggaagag
gagcctgacgacgagaaccatagtggtgaatgcagtgaccaagatggagatgcggagggt
gatggtgacacagatgtctacagtggaagccagagccaaccacttgaagatgatgtcggg
tcaagcacggaggacgaagccggcaacttggatgaggaccccggcagctctcagcaagac
gtgacattggtcggccaaaggccccggcgtgccccgtgtccagaggacgacgacttcatg
gcagcgtttgacaagatgttgtcggaaagcatacttcatcgcagccaggactcggtgaag
ccacaagcagatattgtcatccccatgagcctaaagggtactggccaacagaaaaaaaca
tatagcaaccttctggaaaagaaaggcgaggaagacaagaacaccatgaactttatcctg
atgacccgcaaaggaaacaagccccagttcaagagcttggaggttccggtgtcttcagag
cttgcacagaacctgaaggacagagaggaggctgaaagagcagagaaggaacaagtgaag
atgctcacattgaacatcaatgaaaggcaagaggaagaagattaccaagaaatgcttgca
gcacagcagagacccgtggtgttaaacctgaaccgcgatcggaggcacaaatatcaacac
cccaaaggagctcctgacgcggacctcatcttcggaaacaagaagcgctga
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