Dermacentor silvarum: 119466602
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Entry
119466602 CDS
T07348
Name
(RefSeq) LOW QUALITY PROTEIN: collagen alpha-1(IX) chain-like
KO
K08131
collagen type IX alpha
Organism
dsv
Dermacentor silvarum
Pathway
dsv04512
ECM-receptor interaction
dsv04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
dsv00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
119466602
09140 Cellular Processes
09142 Cell motility
04820 Cytoskeleton in muscle cells
119466602
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00535 Proteoglycans [BR:
dsv00535
]
119466602
Proteoglycans [BR:
dsv00535
]
Extracellular matrix (ECM) proteoglycans
Others
119466602
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Collagen
Laminin_G_2
Laminin_G_3
Laminin_G_1
Motif
Other DBs
NCBI-GeneID:
119466602
NCBI-ProteinID:
XP_037583049
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Position
10:20906537..20992040
Genome browser
AA seq
1013 aa
AA seq
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MLSTLYCLATMALIAVVRTQSDDDLFIPGEETLARLLPEYDEADEEATEVCPRAKPGQDD
LPGFDMIRKFRLDDVQFEFPGVKRVTGSNSLQTAYRLSRKAELVLPTRAVFPLGLPDEFS
FVATFRKRSSRTDPWFLMRVTDVQGASQFGLNVISRKNRLDFFAQDVTGNRQTLRFRNVR
VDDQQWHKVDISVFRDHAVLYLDCEKHSSLELVQRAPIDVNGDVNIGKYESDLSTVPMDL
QWMVMSCNPARPERETCFELPPRGTPPAPTLPTPTEPGLPLESACIECPPGSPGLNGTDG
LPGTPGLAGLPGLPGAPGFKGEIGVAGLPGLPGVDGLPGLPGPLGPIGPKGDTGTPGIPG
IPGLKGQKGDGGIPGEPGLPGVPGTMGPRGPQGPPGSTAVVEGPLGPPGDPGPPGPIGEQ
GLQGQPGPLGLPGSKGEPGERGNTGATGPRGFPGEQGPKGSPGSTGPRGPPGPPGRDGIP
GVTGSGPSSPGLPGRPGVPGEPGTPGPQGEKGSRGLPGPQGIEGEKGGKGDRGIPGLPGV
AGPKGDRGERGYQGDAGSKGDRGPPGIDGARGEPGLIGLPGPTGAAGALGLRGQKGEKGE
NGQPGIPGEPAIPGEPGPQGYVGPKGEPGSDGMKGAMGPMGPRGFPGLPGLPGPPGRPGK
QGHDGIEGPKGAKGDEGPRGPEGSPGEVGPPGIQGLTGKPGPKGIFGDKGLRGPEGPRGL
PGPQGPPGTPGNPGPPGLPGLMGPRGPQGLEGPPGQPGEKGECIYQAREEYLVAPSRPGA
TGAMGPPGMPGERGAPGERGAPGVPGQVGMPGPGGSPGQPGTPGTRGQPGMPGLPGPPGR
GFTEEEVRELCSAVLREQLSELTTKMRGPPGPPGKGKPGKPGQPGPQGSPGDPGTPGLPG
ERGFMGLPGLPGPPGLPGPTGEKGDKGDRGPEGVGVEGPIGPRGSPGSPGPVGVGHPGRP
GERGPPGRLGQPGPRGPPGAQGPPGYCEMCNYEMPDLLHMLHMNTVQQNNKGP
NT seq
3042 nt
NT seq
+upstream
nt +downstream
nt
atgctttccacgctgtactgcctggcgacgatggcacttatcgcagttgtgcgaacacaa
agcgacgacgacctgtttattcccggagaggagacgctggcgaggctgctaccagaatac
gatgaagcggacgaggaagctacagaagtgtgtccacgagcgaagcccggacaagacgac
ctgccaggattcgacatgatccgcaagttccggttggacgacgtccagtttgagttcccg
ggcgtcaagcgggtgaccggctccaacagcctgcagactgcgtacaggctgtcccggaaa
gcggagctcgtactgcccaccagggcggtgtttcctctgggtctccccgacgagttctcg
ttcgtggcgacgttccgcaagcgcagtagtcgcaccgacccgtggttcctcatgcgcgtc
accgacgtccagggggcatcacagttcggactgaacgtgatctccaggaagaaccggcta
gacttctttgcgcaagacgtcaccggaaacaggcagacgctgcggttcagaaacgtccgg
gtcgacgaccagcagtggcacaaggtggacatcagcgtgttcagggaccacgcggtgctc
tacctcgattgcgagaagcactccagtctcgagctcgtccagagggcgcccattgacgtc
aacggtgacgtcaacatcggaaagtacgagtcggacctctccacggtgccgatggacctg
cagtggatggtgatgagctgcaatcctgcgaggccggagagggagacctgcttcgagctg
ccgccaagggggactccaccagcccctacgctgccaacgcccacggagcccggcttgcct
ctggagtccgcgtgcatcgagtgtcccccgggctcaccaggtctgaacggcaccgacggt
ctaccaggaacgccaggtttggctggactccctggactgcctggtgcaccaggtttcaaa
ggcgagattggtgttgcagggctgccaggactaccaggagtggatggcttgcctggactg
cctggaccattgggacctatcggccctaaaggcgacactggaacaccaggaatccccggc
attccaggtctgaaaggccagaaaggagatggcggaatacctggagaaccaggactccct
ggtgtccctgggaccatgggaccaagagggccacaagggccaccaggcagtacagcagtg
gttgagggacctcttgggcctccaggagatcctgggccaccaggaccaataggcgagcaa
gggttacaaggacaaccaggacccttgggactaccaggaagcaagggtgaaccaggtgaa
agaggcaacacaggagcaactggtcctcgtggctttccgggcgaacaaggacccaaaggt
tcaccaggaagcacaggcccccgtggtccacctggaccccctgggcgtgacggtatccca
ggagtcacaggatcagggccatcgtctccaggcttgcccggacggccaggtgtgcctgga
gaacctggaactccaggaccacagggtgaaaaaggcagtcgtggcctacctggcccacaa
ggcattgaaggtgaaaagggcggcaaaggcgatcgtggcattcctggtcttcctggtgtg
gcaggcccgaagggtgacaggggtgaaagaggctaccaaggcgacgctggttcgaagggt
gatcgcggtccacctggaattgatggagcaagaggggagccaggtctgattggactgcct
ggacctactggagcagcgggtgctttgggcttgcgtggtcaaaagggtgaaaaaggagag
aatggacagcccggaattcctggagagcctgccatccctggcgagccaggacctcaaggt
tatgttgggccaaaaggagagcctggatctgatggaatgaagggtgccatgggaccaatg
gggccgagaggattccctggcctccccggcctgcccgggcccccaggacgaccaggaaag
caaggacacgacggaatagagggaccaaaaggagccaagggcgacgaaggaccacgagga
ccagagggatcgcctggtgaagtgggccctccaggaatacaaggcctcaccggcaagcca
gggccgaaaggtatctttggtgacaagggcctccgtggaccagaaggaccgaggggactg
ccagggccacagggtccgccaggaactccaggaaatccaggacccccaggtctaccagga
ctcatggggccgagaggtcctcagggactggagggtcctcccggacagcctggtgaaaag
ggcgagtgcatctaccaagccagggaagaatacctcgttgcaccaagcaggccgggagca
acaggagccatgggaccaccaggaatgccgggtgagcgaggagcacccggcgagcgtgga
gctcctggcgtccccggccaagtgggcatgcctggtccaggcggatcgccaggacagccg
ggaacaccgggaaccaggggacagccaggaatgccgggcctaccgggacctccgggtcgt
ggattcactgaggaagaagtgagagagttatgctcagctgtgcttcgagagcagttgagt
gaactcacaacgaagatgcgcgggcctcctggtcccccagggaaagggaaaccaggaaag
ccaggacaaccgggaccccaagggtcaccaggtgacccaggcacaccaggactgccggga
gagcgtgggtttatgggactacccgggctcccaggaccaccaggactacccggtcccact
ggtgaaaagggtgataaaggtgatcgtggccccgaaggagttggtgtggaaggtccaatt
ggcccccgtggatctccaggatctccaggcccggttggcgtgggccacccagggcggccc
ggcgagcggggacccccgggtcgcctaggacagccaggcccccgcggcccaccaggagcg
cagggaccgcccggctactgcgagatgtgcaactacgaaatgcctgacctgctgcacatg
ttgcacatgaacaccgtccaacagaacaacaagggaccctaa
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