Deinococcus radiopugnans: QR90_07345
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Entry
QR90_07345 CDS
T03508
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
dsw
Deinococcus radiopugnans
Pathway
dsw03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
dsw00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
QR90_07345
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
dsw03400
]
QR90_07345
Enzymes [BR:
dsw01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
QR90_07345
DNA repair and recombination proteins [BR:
dsw03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
QR90_07345
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
CarD_TRCF_RID
TRCF
ResIII
UvrB_inter
AAA_16
Cas3-like_C_2
Motif
Other DBs
NCBI-ProteinID:
AIZ44964
UniProt:
A0A0A7KIA7
LinkDB
All DBs
Position
1532494..1535619
Genome browser
AA seq
1041 aa
AA seq
DB search
MTISAPNLSKLLPAAPPGNLLLLPQVARAALFAAFPGPAVLLTTADRIGNYASAGALGAP
MTVNPGLRDWDGKHEHVVLDVNTALDLFPAHPEEHALSLRVGRNYPREALLTRLERLGYE
RGEEPGYELRGDTLELRLSPGAGRPADADGDIWVRAEFFGDELDTLRLLAPGEMTGEKAQ
TFTLEPTADYLTETKWDATRLELLPGRVFLDSPEFYASSLGVLTDTLWPKLAGREVTSFG
RSPLELPDLDTGLKTLDFYRARLADLERDVAEWRGADYRVLILVRHDRTAAYLADKLLNT
HEIPWLKLPRVEEGGLGFLRGGGEGGFVIPEHRTVVLTEDLIYGFQGGSALRGKRLSGRP
VTDALGLHVGDYLIHPEHGIGQFQGLETRTVLGVTRDYLNLEYRKGARLSVPIEQLPVLR
RHPGTTDDPPVLSSFDKKDWARAKDKARKNAEEVAGKLLVQYAARQVTPGNAFAPVPEWD
KQIEDNFQFELTGDQRIALKETLKDLEKPNPADRLISGDVGFGKTEVALRAAHRVVGHGM
QVAILVPTTLLAEQHTSTFVERFKNLPVRVEGLSRFTSPQSSKAILRDLAAGKVDILIGT
HRLLSGDIEFNNLGLIIVDEEHRFGVSQKEKLRALRGMPDMSDGKLDIPEGVRAVDTLAL
SATPIPRTLYMSMVGLRDMSSIQTPPKGRKPIQTVLAPFDPSTVRDAIISEIERGGKVFY
IHDRIASIGARSLYLRNLVPEARIGVAHGRMNEEELEEIMLGFEEGAFDVLLSTTIVETG
LDIPEANTILIERADRLGLAQLYQLRGRVGRRALAAYAYLFYPPRMTETAQRRLWAIADL
QDLGSGHLLAEKDMEIRGVGNILGEEQHGHVQAVSIDVYTEMLSEAVARLKGEKLQPPVN
ISIDLPINARLTPEYFGGDDEARIATYGRLSDARTLQAISRVERDLRKKYGPPAPDVQNF
IDLAKLRLTAAAKRVLSIGETMTELQVTFAYKSLDYDAAGLKRFPHKTEVQTFPPSVKME
KRGIKVDDYARMLIELLGYFG
NT seq
3126 nt
NT seq
+upstream
nt +downstream
nt
gtgaccatctccgcgcccaacctgtccaaattgctgcccgccgccccgcccggcaacctg
ctgttgctgccccaggtggcgcgggcggcgctgttcgcggccttccctggtccggcggtg
ctgctgaccaccgccgaccgcatcggcaactacgcctcggcgggggcgctgggcgcgccg
atgacggtcaatccgggcctgcgcgactgggacggcaagcacgagcatgtggtgctggac
gtgaacacggcccttgacttatttcccgcccaccccgaagagcacgccctgagcctgcgc
gtggggcgcaactacccgcgcgaggcgctgctgacgcgcctggaacgcctgggctacgag
cgcggcgaggaacccggctacgagctgcgcggcgacaccctggaactgcgcctgtcgccc
ggcgcgggccgccccgccgatgccgacggcgacatctgggtgcgggccgagttcttcggc
gacgagctggacaccctgcgcctgctggcccccggcgagatgaccggcgagaaggcccag
acctttaccctggaacccaccgccgactacctgaccgaaacgaagtgggacgccacccgc
ctggaactgctgccgggccgcgtgtttctcgattccccggagttctacgcctccagcctg
ggcgtgctgaccgacacgctgtggcccaagctggccgggcgtgaggtcacctcgtttggc
cgctcgccgctggagctgcccgatctggacaccggtctgaagacgctggacttctaccgt
gcccgcctcgccgatctggagcgtgacgtggccgagtggcgcggggccgattaccgcgtc
ctgatcctggtgcgccatgaccgcacggcggcgtacctggccgacaagctgctgaacacc
cacgagattccctggctcaagctgccgcgcgtggaggagggcggcctgggcttcctgcgc
ggcgggggagagggcggcttcgtcattcccgaacaccgcacggtggtgctgactgaagac
ctgatctacggcttccagggtggctccgcgctgcgcggcaagcggctgtcgggccgcccg
gtcaccgacgcgctggggctgcacgtgggcgactacctgattcacccggaacatggcatc
gggcaatttcagggcctggagacgcgcacggtgctgggcgtcacccgcgattacctgaac
ttggaataccgcaagggcgcccgcctgagcgtgcccatcgagcaactgcccgtcctgcgc
cgccaccccggcaccaccgacgatccgcccgtcctgagcagctttgacaagaaggattgg
gccagggccaaggacaaggcccgcaagaacgccgaggaggtggcgggcaagctgctggtg
cagtacgccgcccgtcaggtcacccccggcaacgcctttgcccccgttcccgagtgggac
aagcagatcgaggacaacttccagttcgagttgacgggagatcagcgcattgccctcaag
gaaaccctcaaggatctggaaaaacccaaccctgcagaccgcctgatctccggcgatgtg
ggcttcggcaagaccgaggtggcgctgcgggccgcccaccgcgtcgtgggtcacggcatg
caggtggcgattctggtgcccaccacgctgctggccgagcagcacacctccaccttcgtc
gagcgcttcaagaacctgcccgtgcgggtggaggggctgtcgcgctttacctcgccgcag
tcgtccaaggccatcctgcgcgatctggcggcgggcaaggtggacatcctgatcggcacg
caccgcctgctgagcggtgacatcgagttcaacaacctgggtttaatcatcgtggacgag
gaacaccgcttcggcgtgtcgcagaaggaaaaactgcgggcgttgcgcggcatgcccgac
atgtcggacggcaagctcgacattcctgaaggcgtgcgggcggtagacaccctggcgctg
tcggccaccccgattccgcgcaccctgtacatgagcatggtgggcctgcgcgacatgagc
agcatccagacgccgcccaagggccgcaagcccatccagaccgtgctggccccctttgac
cccagcaccgtgcgcgacgccatcatcagcgagatcgaacgcggcggcaaggtcttttac
atccatgaccggattgccagcatcggcgcccgcagtctgtacctccgcaacctcgtgccg
gaagcccgcatcggcgtggcgcacgggcgcatgaacgaggaggagctggaagagatcatg
ctgggcttcgaggagggcgcgttcgacgtgctgctgtccaccaccatcgtcgagacgggg
ctggatatcccggaggccaacaccatcctgatcgagcgggcggatcggctgggcctcgcg
cagctctaccagttgcgtgggcgggtgggccgcagggcgctggcggcctacgcctacctg
ttctacccgccgcgcatgaccgagaccgcgcagcggcggctgtgggccatcgccgatttg
caagacctcggttccgggcacctgctggccgagaaggacatggagattcgcggcgtgggc
aacattctgggcgaggagcagcacgggcatgtgcaggccgtcagcattgacgtgtacacc
gagatgctctcggaagcggtggcgcggctgaagggcgagaagcttcagccgcccgtcaac
atctccattgacctgcccatcaacgcccgcctgaccccggaatacttcggcggcgacgac
gaggcgcggattgccacctatggccgcctctcggacgcacgcaccttgcaggcgatcagc
cgggtggagcgtgacctccgcaagaaatacggcccgcccgccccggacgtgcagaacttc
attgaccttgccaagctgaggctcacggcagccgccaagcgcgtgctgagcatcggcgaa
accatgaccgaattgcaggtgacgttcgcttacaaatcactggattacgacgccgccggc
ctcaagcgctttccccacaagaccgaggtgcagaccttcccgccctccgtgaagatggag
aaacgggggatcaaggtggacgattacgcgcggatgttgattgagttgctgggatatttt
gggtga
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