Deinococcus radiopugnans: QR90_07945
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Entry
QR90_07945 CDS
T03508
Name
(GenBank) transcription termination factor Rho
KO
K03628
transcription termination factor Rho
Organism
dsw
Deinococcus radiopugnans
Pathway
dsw03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
dsw00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
QR90_07945
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
dsw03021
]
QR90_07945
03019 Messenger RNA biogenesis [BR:
dsw03019
]
QR90_07945
Transcription machinery [BR:
dsw03021
]
Prokaryotic type
Bacterial type
Other transcription-related factors
Transcription termination factor
QR90_07945
Messenger RNA biogenesis [BR:
dsw03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
QR90_07945
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
ATP-synt_ab
Rho_RNA_bind
Rho_N
AAA_25
AAA_22
Spore_III_AA
ATPase_2
NACHT
nSTAND_NTPase5
AAA
AAA_14
AAA_24
SNF2-rel_dom
AAA_16
MMR_HSR1
FeoB_N
Motif
Other DBs
NCBI-ProteinID:
AIZ46535
UniProt:
A0A0A7KKC7
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All DBs
Position
1661292..1662545
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AA seq
417 aa
AA seq
DB search
MPFQELQQKILPELHLIAAGYGIDNYRKLKKDALALAIMEHQADAEGQLLARGYLEISAD
GYGFLQSDLLDPNSRTVLVTAGLIKANHLRTGDQVIGRARRPRENERFGSLVQVEAVNGL
DPDSARRRPRFDDLTPTFPEAQLVLEDPGNPDGLSLRVVDLLVPIGRGQRALIVAPPKAG
KTTLLKQIANSIVKNYPDVTVMVLLVDERPEEVTDFRESVQGAQVVASTFDEPPQHHVRV
AEFVHERARRIVEDGGHVVILLDSITRLARANNLVTPPTGRTLSGGLDSNALHWPKRFLG
AARNIREGGSLTILATALVETGSRMDDVIFEEFKGTGNAELVLSRRLEERRIFPALDIIK
SGTRREELLLRPEVLKKMWLLRKVISDMDPADAMEMLLSRMGKTRNNVEFLQNLAGG
NT seq
1254 nt
NT seq
+upstream
nt +downstream
nt
ctgccgtttcaggaactgcagcagaagatcctgcccgagctgcacctgatcgccgccggc
tacggcatcgacaactaccgcaagctgaaaaaagacgcgctggcgctggcgatcatggag
caccaggccgacgccgagggccagctgctggcgcgcggctatctggaaatcagcgcggac
ggctacggcttcctgcaatcggacctgctggaccccaacagccgcacggtgctggtcacg
gcggggctgatcaaggccaaccacctgcgcaccggcgatcaggtgattggccgcgcccgc
cgcccgcgcgagaacgagcgctttggctcgctggtgcaggtcgaggcggtcaacgggctg
gaccccgactcggcccgccgccgcccccgcttcgatgacctgacccccactttccccgag
gcgcaactggtcctggaagaccccggcaaccccgacggcctgagcctgcgcgtcgtcgat
ctgctggtgcccatcgggcgcgggcagcgggcgctgatcgtggcgccgccgaaagccggg
aagacgacgctgctgaagcagatcgccaattccatcgtcaagaactatcccgacgtgacc
gtgatggtgctgctggtcgacgagcgtcccgaggaggtcaccgacttccgcgagagcgtg
cagggcgcgcaggtcgtggcctccaccttcgacgagccgccgcagcaccacgtccgggtg
gccgaattcgtgcatgaacgcgcccggcgcatcgtggaggacggcggccatgtggtgatc
ctgctggacagcatcacgcgtctggcccgcgccaacaacctggtcacgccgcccaccggc
cgcacgctgtcgggcggtctggacagcaacgcgctgcactggcccaaacgcttcctgggc
gcggcgcgcaacatccgcgagggcggcagcctgaccatcctggccactgcgctggtggaa
accggcagccgcatggacgacgtgatcttcgaggagttcaagggcaccggcaacgccgaa
ctggtgctgtcgcgccgcctggaagagcgccgcatcttcccggcgctggacatcatcaag
tccggcacccgccgcgaggaactgctgctgcggcccgaggtgctgaaaaagatgtggctg
ctgcgcaaggtgatcagcgacatggaccccgccgacgcgatggaaatgctgctctcgcgc
atgggcaagacccgcaacaacgtcgagttcctgcagaatctggcgggcggctga
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