Desulfolutivibrio sulfoxidireducens: GD604_02955
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Entry
GD604_02955 CDS
T06821
Symbol
rny
Name
(GenBank) ribonuclease Y
KO
K18682
ribonucrease Y [EC:3.1.-.-]
Organism
dsx
Desulfolutivibrio sulfoxidireducens
Pathway
dsx03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
dsx00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
GD604_02955 (rny)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
dsx03019
]
GD604_02955 (rny)
Messenger RNA biogenesis [BR:
dsx03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
GD604_02955 (rny)
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Gene cluster
GFIT
Motif
Pfam:
RNase_Y_N
HD
KH_1
HDOD
KH_KhpA-B
KH_2
Spore_YhcN_YlaJ
Motif
Other DBs
NCBI-ProteinID:
QLA18758
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Position
703824..705383
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AA seq
519 aa
AA seq
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MDFSTVFIVIVSLCAGGAGGYYLYQFISQKTLKESRSLAERILEEAKKEAQAQKKEFLVQ
AQDDLFRQKKELENEYKERLQSLESKESQLARKQEKLEEKQEQVVARESEQLGTEKRLAS
LERALSEKQEQLERSSEEHLQRLQEISGLTVDEARKLVLAETESRTRHEAARMIRQIEME
ARETADKSGKKILALAIQRYAGDFVAEQTVTAVTLPSEEMKGRIIGREGRNIRALEAATG
VDLIIDDTPETVILSAFSPIRRQVAKMALERLITDGRIHPARIEDIVKKVEQEFEVKLRE
IGEQATFDIGVHGINPELVRLLGHLQYRTSYSQNVLQHSLEVSTLCGIMAAELGLDVKKA
KRAGLLHDIGKAVDHEIEGPHAVIGADLAKKFGEGPDIIHAIQAHHEDVPPKSILAILVQ
AADSLSGARPGARKELLESYVKRLEELENLATAFDGVSKAYAIQAGREIRVVVDSDAVDD
DKTFLLCKDIAKQIEDNLTYPGQIRVTVIRERRAVGYAK
NT seq
1560 nt
NT seq
+upstream
nt +downstream
nt
atggatttttccaccgtttttatcgtgatcgtgtcgctgtgtgccggaggcgccgggggc
tactacctgtatcagttcatctcccagaaaacgctcaaggaatcccgctccctggccgag
cgcatcctcgaggaggccaagaaggaggcccaggcccagaaaaaagagtttctggtccag
gcccaggacgatctgttccgccagaaaaaggaactcgaaaacgagtacaaggagcggctc
cagtccctggagtccaaggaatcccagcttgcccgcaagcaggaaaaactcgaggaaaag
caggaacaggtcgtggccagggagagcgagcagctcggcacggaaaagcgcctggccagc
ctggaacgcgccctttccgaaaaacaggaacagctcgaacggtcctccgaggaacacctc
cagcgccttcaggagatctccggcctgaccgtggacgaggcccggaagctggttctggcc
gagaccgaaagccgcacccggcacgaggcggccaggatgatccgccagatcgagatggag
gcccgggagaccgcggacaaaagcggcaagaagatcctggccctggccatccagcgctat
gccggggacttcgtggccgaacagaccgtcaccgccgtgaccctgccctcggaggagatg
aagggccgcatcatcggccgcgagggccgcaacatccgcgccctggaggcggccacgggc
gtggacctgatcatcgacgacacccccgagacggtcatcctctcggccttctcccccatc
cgccgccaggtggccaagatggccctggagcggctgatcaccgacggccgtatccatccg
gcccgcatcgaggacatcgtcaagaaggtggagcaggaattcgaggtcaagctgcgcgag
atcggcgaacaggccaccttcgatatcggcgtgcatggcatcaatcccgaactggtccgc
cttctggggcacctgcaataccgtaccagttattcccagaacgtgctccagcactccctg
gaggtctccacgctgtgcggcatcatggctgcggaactgggcctcgacgtgaaaaaggcc
aagcgggcggggcttctgcacgacatcggcaaggccgtggaccacgagatcgagggaccc
cacgcggtcatcggggccgatttggccaagaaattcggcgagggcccggacatcatccac
gccatccaggcccaccacgaggacgtgccgcccaagtccatcctggccatcctggtccag
gccgcggacagcctctccggggcccggcccggggcccgcaaggaactcctggaaagctac
gtcaagcgcctggaggagctggaaaatctggccacggccttcgacggcgtgtccaaggcc
tacgccatccaggccgggcgcgagatccgggtggttgtggactccgacgccgtggacgac
gacaagacctttcttctgtgcaaggacatcgccaagcagatcgaggacaacctcacctat
ccgggacagattcgggtcacggtcatccgcgagcgccgggccgtgggctacgcgaaatag
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