Desulfolutivibrio sulfoxidireducens: GD604_03245
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Entry
GD604_03245 CDS
T06821
Name
(GenBank) DEAD/DEAH box helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
dsx
Desulfolutivibrio sulfoxidireducens
Pathway
dsx03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
dsx00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
GD604_03245
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
dsx03019
]
GD604_03245
Enzymes [BR:
dsx01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
GD604_03245
Messenger RNA biogenesis [BR:
dsx03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
GD604_03245
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_19
AAA_22
Flavi_DEAD
CoA_binding_2
P-loop_SecA
Motif
Other DBs
NCBI-ProteinID:
QLA18812
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All DBs
Position
complement(768370..769659)
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AA seq
429 aa
AA seq
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MSFASFDLHPLLLANIESLGYQTPTPIQTEAIPPVMEGRDAMGLAQTGTGKTAAFLLPIL
NRLARREIPKRRAVKALIVAPTRELAEQIHDAVRDLGRRVNVKSVTVYGGVGMSPQTQAL
RRGVDIVVACPGRLLDHIRQGNTDFSALDTLVLDEADHMFDMGFLPDIRAIMDKLPAKRQ
TLLFSATMPDSIKKLAADILTDPITVRIGRQAPAETVEHAVYPVSPSRKTPLLLELLDKA
KTDSVIVFTRTKHKAKNLAELLCKSGRRAACIQGNLSQRQRQAALDGFKAGTYRVLVATD
IAARGIDVSKVGHVINFDIPDTPDAYTHRIGRTGRAECQGQAHTLITREDMPMVRAIEHA
MGKPLPRRELDGFAPTPQEYRAEPDAPRDGYNRNRRPGNGGGYGRNFGQSRPAGQNRNTR
QAPRREAHA
NT seq
1290 nt
NT seq
+upstream
nt +downstream
nt
ttgagctttgcatcttttgatttgcatccccttcttctggccaacatcgaatccctgggc
taccaaacccccacccccatccagaccgaggccattcccccggtcatggaaggccgcgac
gccatgggcctggcccagaccggaaccggcaagaccgccgcgttccttctgcccatcttg
aaccgcctggcccgccgcgaaatccccaagcgccgcgccgtcaaggcccttatcgtcgcc
cccacccgggaactggccgaacagatccatgacgccgtgcgcgacctcggccgccgcgtc
aacgtcaaaagcgtcaccgtctacggcggcgtgggcatgagcccccagacccaggccctg
cgtcgcggcgtggacatcgtcgtggcctgccccggacgcctgctcgaccacatccgccag
ggcaacaccgacttctccgccctggacaccctggtcctggacgaggccgaccacatgttc
gacatgggctttctccccgacatccgggccatcatggacaagctcccggccaaacgccag
accctgctcttctcggccaccatgcccgacagcatcaaaaaactggccgccgacatcctg
accgatcccatcaccgtgcgcatcggccgccaggccccggccgaaaccgtggagcacgcc
gtctaccccgtcagccccagccgcaagacccccctgctcctggaacttttggacaaggcc
aaaaccgactcggtcatcgtgttcacccgcaccaaacacaaggccaaaaacctggccgaa
ctgctgtgcaaatccggacgccgcgccgcctgcatccagggcaacctgtcccagcgccaa
cgccaggccgccctcgacggcttcaaggccggcacctaccgcgtcctggtggccacggac
atcgccgcccggggtatcgacgtctccaaggtcggacacgtcatcaacttcgacatcccc
gacacccccgacgcctatacccaccgcatcggccgcaccggccgcgccgaatgccaggga
caggcccataccctgatcacccgcgaggacatgcccatggtccgggccatcgaacacgcc
atgggaaaacccctcccccgccgcgaactcgacggcttcgcccccaccccccaggaatac
cgcgccgaacccgacgccccgcgcgacggctacaaccgcaaccgtcgccccggcaacggg
ggcggctatggacgcaacttcggacaaagccggcccgccggccagaaccgcaacacccgc
caggccccgcgccgcgaggcccacgcctag
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