Desulfolutivibrio sulfoxidireducens: GD604_07610
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Entry
GD604_07610 CDS
T06821
Symbol
rpoB
Name
(GenBank) DNA-directed RNA polymerase subunit beta
KO
K03043
DNA-directed RNA polymerase subunit beta [EC:
2.7.7.6
]
Organism
dsx
Desulfolutivibrio sulfoxidireducens
Pathway
dsx03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
dsx00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
GD604_07610 (rpoB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
dsx03021
]
GD604_07610 (rpoB)
03400 DNA repair and recombination proteins [BR:
dsx03400
]
GD604_07610 (rpoB)
Enzymes [BR:
dsx01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
GD604_07610 (rpoB)
Transcription machinery [BR:
dsx03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
GD604_07610 (rpoB)
DNA repair and recombination proteins [BR:
dsx03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
GD604_07610 (rpoB)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_3
RNA_pol_Rpb2_7
RNA_pol_Rpb2_1
RNA_pol_Rpb2_2
RNA_pol_Rpb2_45
Motif
Other DBs
NCBI-ProteinID:
QLA19609
LinkDB
All DBs
Position
1722510..1726601
Genome browser
AA seq
1363 aa
AA seq
DB search
MAQLRKNFGKIAKSLTIPHLLNLQIDSYDLFLQQNTPPASRADAGLEGVFRSVFPIEDFN
KTASLEYVSYEIGEPKYDVAECIAKGLTYEAPLRIKVRLVVYDVDEETENRTIRDIKEQI
IYFGTVPLMTEKGTFIINGTERVIVNQLQRSPGIIFEHDSGKTHTSRKVLYSCRIIPMRG
SWLDFDYDHKDILYVRIDRRRKMPATILFKAMGMSSTDILRYFYAVEYFRLEGDRVFREI
SPEMYRKEKAYATVIGSDGKPIVTADKPITKKAWRLLVEGGFEAIEIDPATLTGLYLAED
MADPGTGEVIAAAGDEVTPDLQEKLKDANLTRLPILFSRGVDTSSSIRDTLALDKSTDTV
SAQVEIYRRLRPSSPPTQEIAASFFENLFRNADYYDLSPVGRYKLNVRLKLDLSLDFRVL
SNEDILRSVKHLTFLKDSHGPADDIDHLGNRRVRPVGELVENQYRIGLVRMERAIKERMS
LQEVATLMPHDLINPKPVAAVLKEFFGTSQLSQFMDQTNPLSEVTHKRRLSALGPGGLTR
ERAGFEVRDVHTSHYGRICPIETPEGPNIGLIVSLTTYSRVNDYGFIETPYRVVKDGVVT
EDVVYLDATREIDEIIAGANTEVAADGLLAPVVGARVKGDLLMRPREEVTLMDISPSQIV
SVSAALIPFLEHDDANRALMGSNMQRQAVPLLRCEQPLVGTGMEAAVARDSGSCILAEQD
GMVHFADAERIIVNYEGDISPGTGGVKTYELMKHHKSNQNTCFGQVPRVLVGQKVKKGDI
LADGPGIRDGELALGKNLLVAFMPWCGYNYEDSILISERTVKEDTFTSVHIEEFEVVARD
TKLGPEEITRDIPNVGEEMLKDLDECGIIRLGAKVGPDDILVGKITPKGETQLTPEEKLL
RAIFGDKARDVKNTSLKVPPGIEGTVIDVRVFNRRSGEKDDRTGAIEEFELARLDVKEAQ
FVAALTDSIREKLWVEVAGKSVAQTIKGRKKGEVLLEAGHPLRREILDELPLRKLAGLFT
SKEVNELVAARLDEYEHQIQFIHNIHEQKRAKVTEGDDLPPGVIKMVKVYVAVKRKLNVG
DKMAGRHGNKGVVSCILPEEDMPFFADGSPVDIVLNPLGVPSRMNIGQIMETHLGWAGKV
LGRKLAQMVAERNPLGEVREAVKDMLGSPEVAELVDSLSDEEFVASVKAVKDGIVAKTPV
FDGASEDEIWSWLKKAGLSDDGKVVLYDGRTGEAFHRPVTVGVMYMLKLHHLVDEKIHAR
STGPYSLVTQQPLGGKAQFGGQRLGEMEVWALEAYGASHLLQEFLTVKSDDVAGRVKMYE
KIVKGDNFLEAGLPESFNVLVKELMSLGLDVDLLQDEKKKAKR
NT seq
4092 nt
NT seq
+upstream
nt +downstream
nt
atggcccaactgagaaagaattttggaaaaatcgccaaatccctgaccatcccgcatttg
ctgaacctgcagatcgactcctacgatctgtttctgcagcagaacaccccgccggccagt
cgggcggacgcggggctggaaggcgtgttccggtccgtgtttcccattgaggatttcaac
aagaccgccagcctggaatacgtcagctacgagatcggcgaaccaaaatacgacgtggcc
gagtgcatcgccaaagggttgacctacgaagcccccctgcggatcaaggtgcgcctcgtt
gtctatgacgtggatgaggagaccgagaaccgcaccatccgggacatcaaggaacagatc
atctacttcggcaccgtgccgcttatgaccgagaagggcaccttcatcatcaacggcacc
gaacgggtcatcgtcaaccagctccagcgctccccgggcatcatcttcgagcacgactcc
ggcaagacccacaccagccgcaaggttctctattcctgccgcatcatccccatgcgcggt
tcatggctggatttcgactacgatcacaaagacatcctctacgtgcgcatcgaccgccgg
cgcaagatgcccgccaccatccttttcaaggccatgggcatgtcctccacggatatcctg
cgctatttctacgccgtggaatacttccgcctggaaggagaccgggtcttccgggagatc
agcccggagatgtatcgcaaggaaaaggcctacgccacggtcatcggttccgacggcaag
cccatcgtcaccgcggacaagcccatcaccaaaaaggcctggaggcttctggtcgagggc
ggcttcgaggccatcgagatcgatccggccaccctgaccgggctctatctggccgaggac
atggccgatccgggaaccggcgaggtcattgccgccgccggcgacgaggtgacccccgac
ctccaggaaaagctcaaggacgcgaacctcacccggctgcccatcctgttttcccggggc
gtggacacctcgtcctccatccgcgacaccctggccctggacaagtccacggacacggtc
tcggcccaggtggagatctaccggcggcttcggccctcctccccgcccacccaggagatc
gcggccagcttcttcgagaatctctttcgcaacgcggactattacgacctctcgcctgtg
gggcggtacaagctcaacgtccggctcaagctcgatctgtccctggactttcgggtgctc
tccaacgaggacatcctgcgctcggtcaagcacctgaccttcctcaaggactcccacgga
ccggccgacgacatcgaccatctgggcaaccgccgggtgcgtcccgtgggcgaactggtg
gaaaaccagtaccgcatcggcctggtgcgcatggagcgggccatcaaggagcgcatgagc
ctgcaggaagtggccacgctgatgccccacgacctgatcaatcccaagcccgtggccgcc
gtgctgaaagagttcttcgggacctcccagctctcccagttcatggaccagaccaacccc
ctctccgaggtcacccacaagcgtcgcctgtcggccctgggtcccggggggcttacccgc
gagcgggccgggttcgaggtccgcgacgtccatacctcgcactacggacgcatctgcccc
atcgagaccccggaaggtccgaacatcgggcttatcgtgtccctgaccacctattcccgg
gtcaacgactacggcttcatcgagaccccctaccgggtggtcaaggacggtgtggtcacc
gaggacgtggtctacctcgacgccacccgggagatcgacgagatcatcgccggggccaac
accgaggtggccgctgacgggcttctggccccggtggtcggggcccgggtcaagggcgac
ctgctcatgcggccgcgcgaggaggtcacgctcatggacatctcgccgagccagatcgtg
tccgtgtccgccgcgcttattcccttcctcgaacacgacgacgccaaccgggcgctcatg
ggatcgaacatgcagcgccaggccgtgccccttttgcgctgtgaacagcccctggtgggc
accggcatggaggcggccgtggcccgggattcgggcagttgcatcctggccgagcaggac
gggatggtgcacttcgccgacgccgaacgcatcatcgtcaactacgagggcgacatctcc
cccgggaccggcggggtcaagacctacgaactcatgaagcaccacaagtccaaccagaac
acctgcttcgggcaggtccccagggtcctggtgggacagaaggtgaaaaagggcgacatc
ctggccgacggcccgggcatccgcgacggcgaactggccctgggcaagaacctgctggtg
gcctttatgccctggtgcggctacaactacgaggattccatcctcatctccgaacgcacg
gtcaaggaggacaccttcacctccgtgcatatcgaggaattcgaggtggtggcccgcgac
accaagctcggtcccgaggagatcacccgggacatccccaacgtcggcgaggagatgtta
aaagacctcgacgagtgcggcatcatccgcctgggggccaaggtcggccccgacgacatc
ctggtgggcaagatcacccccaagggcgagacccagctcacccccgaggagaaactcctg
agggccatcttcggcgacaaggcccgcgacgtcaaaaacacctccctcaaggtgccgccg
ggcatcgagggcacggtcatcgacgtgcgggtgttcaaccgccgctcgggcgaaaaggac
gaccgcaccggggccatcgaggaattcgagctggcccgcctggacgtcaaggaggcccag
ttcgtggccgccctgaccgattcgatccgggagaagctgtgggtcgaggtggccggaaag
tccgtggcccagaccatcaagggcaggaagaagggcgaggtgctgctcgaggccggccat
cccctgcgccgcgagatcctcgacgagttgccgctacggaaattggccggccttttcacc
tccaaggaggtcaacgaactggtggccgccaggctcgacgaatacgagcatcagatccag
ttcatccataatatccacgagcagaagcgggccaaggtcaccgagggcgacgatctgccg
cccggggtcatcaagatggtcaaggtctacgtggccgtcaaacgcaagctcaacgtgggc
gacaagatggccggacgccacggcaacaaaggcgtcgtctcgtgcatcctgcccgaggag
gacatgccctttttcgccgacggttccccggtggacatcgtcttgaaccccctgggcgtg
ccctcgcgcatgaacatcggccagatcatggagacccacctgggctgggccggcaaggtg
ctcggccgcaagctggcccagatggtggccgaacgcaacccgctgggcgaggtccgcgag
gcggtcaaggacatgctgggttcgcccgaggtggccgagctggtggacagcctaagcgac
gaggaattcgtggccagcgtcaaggccgtcaaagacggcatcgtggccaagaccccggtt
ttcgacggcgcaagcgaggacgagatctggagttggctcaaaaaggccggactctcggac
gacggcaaggtggtgctttacgacggccgcaccggcgaggcgtttcatcggccggtcacc
gtgggcgtcatgtatatgctcaagcttcaccatctggtcgacgaaaagatccatgcccgg
tccaccggtccctactccctggtcacccagcagccgctcggcggcaaggcccagttcggc
ggccagcggctgggtgaaatggaggtctgggcacttgaggcgtatggcgcgtcgcatctt
ctgcaggagttcttgacggtcaagtccgacgacgtggccggccgggtcaagatgtacgag
aagatcgtcaagggagacaacttcctggaggccggactgcccgagtccttcaacgtcctg
gtcaaggaactgatgtccttgggcctggatgtggatctgctccaggacgagaagaaaaag
gccaagcgctaa
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