Desulfolutivibrio sulfoxidireducens: GD604_07615
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Entry
GD604_07615 CDS
T06821
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
dsx
Desulfolutivibrio sulfoxidireducens
Pathway
dsx03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
dsx00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
GD604_07615 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
dsx03021
]
GD604_07615 (rpoC)
03400 DNA repair and recombination proteins [BR:
dsx03400
]
GD604_07615 (rpoC)
Enzymes [BR:
dsx01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
GD604_07615 (rpoC)
Transcription machinery [BR:
dsx03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
GD604_07615 (rpoC)
DNA repair and recombination proteins [BR:
dsx03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
GD604_07615 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Apocytochr_F_C
RPOC_hybrid
Motif
Other DBs
NCBI-ProteinID:
QLA19610
LinkDB
All DBs
Position
1726783..1730940
Genome browser
AA seq
1385 aa
AA seq
DB search
MSLDELFSMRGLGQNAISGRTLKAIKISIASPEKIREWSFGEVKKPETINYRTFKPERDG
LFCAKIFGPVKDYECNCGKYKRMKHRGIVCEKCGVEVIASKVRRERMGHIELAAPVAHIW
FLKTLPSKIGTLLDMTMVDLEKVLYFDSYVVLDPKDTNLHKLQVISEEQFLQVIDHYGGE
DAVKVGMGAEAVRLLLEEIDMAKLRAELRDEAMTTKSQTKKKKIIKRLKIVEAFLESTNR
PEWMIMEVIPVIPPELRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLLELGAPDIIIR
NEKRMLQEAVDALFDNGRRGRAITGTNGRPLKSLSDMIKGKQGRFRQNLLGKRVDYSGRS
VIVVGPKLRLHQCGLPKKMALELFKPFIYSRLEDKGLATTIKTAKKMVEREELVVWDILE
EVVREYPILLNRAPTLHRLGIQAFEPTLVEGKAIQLHPLVCSAYNADFDGDQMAVHVPLS
MEAQIECRVLMMSTNNILSPANGNPIIVPSQDIVLGLYYLTVERSFSKGAGKIFSDPGEV
VCALDAEVVSLHARVKVRIDGKLVDTTPGRIIVGELMPPEVPFEMVNTVLNKRSIGRLVG
ETYRQAGTKATVILCDHLKTLGYEYATRAGISIGVKDLTVPSRKQAILDASQNEVIQIEQ
QYAEGIITRTEKYNKVVDVWTKATNDVAAEMMREISTDTLHDDRTGAIERNTSFNPIFMM
THSGSRGNQDQMRQLAGMRGLMAKPSGEIIETPITSNFREGLSVAQYFISTHGARKGLAD
TALKTANSGYLTRRLVDVVQDVIITDIDCGTVDGLEISHYIKAGDVKQRVHERALGRMTM
FDVLDPATEEVLIPANTIIDEHYAQVIEDSGISSLMIRSTLTCQSKYGVCAHCYGRDLAR
GHLVNVGETVGIIAAQSIGEPGTQLTMRTFHIGGTAAREIERSSITAQHPGRIALTRVKS
IKNTQGQLIIMGKSGQVSIVDEQGREREKYNMPSGAKLFVAAGEEVRKDQMLAEWDPFNE
PFVTDVSGVIKFTDILEGKTYQEKVDETTKRATQTIIEYRTTTFRPSISVCDETGRPKPR
PGTNSPAVFQLPVGAIIMIRDGQEVFEGDIIARKPRETSKTKDIVGGLPRVAELFEVRKP
KEMAVVSEIDGMVSFGPETKGKRKIVVTPDAGDPKEYLIPRGKHITVQEGDFVEAGELLT
EGYPELHDILKIKGEKFLAKYLVEEIQDVYRFQGVAINDKHIEIIVRQMLKKVQVLDSGD
TNFLIGEQVDKQKFMEENLRCAKEGLRPAVAEPLVLGITQASLSTDSFISAASFQETTKV
LTEASLMGKEDSLRGLKENVIVGRLIPAGTGYRRYMECEITVPRQPERPDKFLEDLEEDP
LLIDM
NT seq
4158 nt
NT seq
+upstream
nt +downstream
nt
atgtctttggacgaactgtttagcatgcgcggtctgggccagaacgccatttccggtcgg
acgctcaaggccatcaagatctccatcgcttccccggagaaaatccgggaatggtccttc
ggcgaggtcaaaaagcccgagaccatcaattaccggacgttcaagcccgagcgcgacggg
cttttttgcgccaagatcttcggcccggtcaaggactacgaatgcaactgcggcaagtac
aagcgcatgaagcaccggggcatcgtctgcgagaagtgcggggtcgaggtcatcgcctcc
aaggtgcgccgcgagcgcatggggcacatcgaactggccgcccccgtggcccacatctgg
tttttaaagaccctgccctccaagatcggcacgcttttggacatgaccatggtcgatctg
gagaaggtgctctatttcgactcctatgtggtgcttgacccgaaagataccaacctgcac
aagcttcaggtcatctccgaggagcagttcctccaggtcatcgaccactacggcggagag
gacgcggtcaaggtgggcatgggcgccgaggccgtgcgcctgcttctggaggagatcgac
atggccaagcttcgcgccgaactgcgcgatgaggccatgaccaccaagtcccagaccaag
aaaaagaagatcatcaagcggctgaaaatcgtcgaggccttcctcgagtccaccaaccgg
ccggagtggatgatcatggaggtcattccggtcatcccgccggaactgcggcccctggtc
ccgctcgacggcggacgcttcgccacctcggacctaaacgacctctaccgccgggtcatt
aaccgcaacaaccgcttaaaacgcctgctggaactgggcgcgccggacatcatcatccgc
aacgaaaagcgcatgctccaggaggccgtggacgccctgttcgacaacggccgtcgcggc
cgggccattaccgggaccaacggcaggccactcaaatccctgtccgacatgatcaagggc
aagcagggccgcttccgccagaaccttctgggcaagcgcgtggactattccggccgttcg
gtcatcgtggtcggacccaaactgcggctgcaccagtgcggattgcccaagaagatggcc
ttggagctctttaagcccttcatctattcccgcctggaggacaaagggctggccaccacc
atcaagaccgccaaaaagatggtcgagcgcgaggaactggtggtctgggacatcctcgaa
gaggtggtgcgcgagtatccgatccttttgaaccgcgcgcccaccctgcaccgcctgggc
atccaggccttcgagccgaccctggtcgagggcaaggccattcagctccatcccctggtg
tgctcggcctacaacgccgacttcgacggcgaccagatggccgtgcacgtgcccctgtcc
atggaggcccagatcgagtgccgggtgctcatgatgtccaccaacaacatcctgtccccg
gccaacggcaacccgatcatcgtgccctcccaggacatcgtgctcgggctgtactatctg
accgtggagcgctccttcagcaagggcgcgggcaagatcttctccgatccgggcgaggtg
gtctgcgccctggacgccgaggtggtcagcctgcacgcccgggtcaaggtgcgcatcgac
ggcaagctcgtggacaccaccccgggccggatcatcgtgggcgagctcatgccccccgag
gtgcccttcgagatggtcaataccgtgctcaacaagcgcagcatcggccggctcgtgggc
gagacctaccgccaggccgggaccaaggccacggtcatcctgtgcgaccacctgaaaacc
ctgggctacgaatacgccacccgggccggcatctccatcggcgtcaaggacctgaccgtc
cccagccgcaagcaggccatcctggacgcctcccagaacgaggtcatccagatcgagcag
cagtacgccgagggcatcatcacccgcacggagaagtacaacaaggtcgtggacgtgtgg
accaaggccaccaacgatgtggccgcggagatgatgcgcgagatatccaccgacaccctg
cacgacgacaggaccggggccatcgagcgcaacaccagcttcaaccccatcttcatgatg
acccactccggatcccggggcaaccaggaccagatgcggcagcttgcgggcatgcgcggc
cttatggccaagccctcgggcgagatcatcgagacccccatcacctccaacttccgcgag
ggcctgtccgtggcccagtacttcatctccacccacggcgcccggaaaggcctggcggat
acggcgctgaaaaccgccaactccggatacctgacccgccgcctggtggacgtggtccag
gacgtgatcatcaccgacatcgactgcggcaccgtggacggcctggagatctcccactac
atcaaggccggcgacgtgaagcagcgcgtgcacgagcgggcccttggccggatgaccatg
ttcgacgtgctcgatccggccaccgaagaggtgctcatcccggccaacaccatcatcgac
gagcactacgcccaggtcatcgaggactccggcataagctcgctcatgatccgttccacg
ctgacctgccagagcaaatacggcgtgtgcgcgcattgctacggacgcgatctggcccgg
gggcacctggtcaacgtgggcgagaccgtgggcatcatcgcggcccagtccatcggcgag
cccggcacccagttgaccatgcgcaccttccacatcggcggcacggcggccagggaaatc
gagcgctcgtccatcaccgcccagcatcccggacgcatcgccctgacccgggtcaagtcc
atcaagaacacccagggccagctcatcatcatgggcaaaagcggccaggtgagcattgtg
gacgagcagggacgggaacgcgagaaatacaacatgccctcgggggccaagctcttcgtg
gccgccggggaagaggtgcgcaaggaccagatgctggccgagtgggaccccttcaacgag
cccttcgtcaccgacgtctcgggcgtgatcaagttcaccgacatcctggagggcaagacc
taccaggagaaggtggacgagaccaccaagcgggccacccagaccatcatcgaataccgg
accacgacgtttcggccgagcatctccgtgtgcgacgagaccggccggcccaagccccgg
cccggcaccaactccccggcggtcttccagttacctgtcggggccatcatcatgatccgc
gacggccaggaggtcttcgagggcgacatcatcgccagaaagccccgggaaacctcgaaa
accaaggacatcgtcggcggcttgccccgcgtggccgagcttttcgaggtcagaaagccc
aaggaaatggccgtggtgtccgaaatcgacggcatggtgtccttcggaccggagaccaag
ggcaagcgcaagatcgtggtcaccccggacgccggcgatcccaaggaatacctgatcccg
cgcggcaagcacatcaccgtgcaggagggcgacttcgtggaggccggggagctcttgacc
gagggctatcccgagctgcacgacatcttaaagatcaagggcgagaagtttttggccaag
tacctcgtggaggagatccaggacgtctaccggttccagggcgtggccatcaacgacaag
cacatcgagatcatcgtgcgccagatgctcaaaaaggtgcaggtgctcgattccggcgac
accaacttccttatcggggagcaggtggacaagcagaagttcatggaggaaaacctgcgc
tgcgcgaaggagggcctgcggcccgctgttgccgaaccgctggttctgggcatcacccag
gcctcgttgtccacggattcgttcatctccgcggcgtcctttcaggagaccaccaaggtg
ctcaccgaggcgtcgctcatgggcaaggaggacagcctgcggggacttaaggaaaacgtc
atcgtgggccggctcatcccggccggcaccggctatcgccggtacatggaatgcgagatc
accgttccgcgccagcccgagcggccggacaagttcctggaggacctggaagaggatccg
ctgctgatcgacatgtga
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