Desulfitobacterium hafniense Y51: DSY0189
Help
Entry
DSY0189 CDS
T00333
Name
(GenBank) hypothetical protein
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
dsy
Desulfitobacterium hafniense Y51
Pathway
dsy03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
dsy00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
DSY0189
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
dsy03400
]
DSY0189
Enzymes [BR:
dsy01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
DSY0189
DNA repair and recombination proteins [BR:
dsy03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
DSY0189
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
TRCF
UvrB_inter
CarD_TRCF_RID
Helicase_C
ResIII
Cas3-like_C_2
AAA_22
RecG_dom3_C
UB2H
DUF6026
Motif
Other DBs
NCBI-ProteinID:
BAE81978
UniProt:
Q251R4
LinkDB
All DBs
Position
203181..206717
Genome browser
AA seq
1178 aa
AA seq
DB search
MKTLSHYLRLGFDIEAVDKAVSYKEWPQMIYNLTGSQKPAFAAQLIQKGKPGLIITYSEE
LAQKWVNDLRSWLPGEDVLYFPSSEWLPFEVLGKSRETTIERIRVLNRLAQDNQCTVVVP
ALAVNQRSFSRRRWQEYILELKEGTSYDLKDLAQKLSTAGYERLDVVDGKGQFAIRGGIM
DIAPLDGEPLRVEFFDDEVDSIRVFDLETQKSTETLKSVKIPPALEVVIRPEELEKLGWE
VRAQARKQAGRLNRSGRSDVAEQVMKQAQRIEERLKTGRVDESIYPYLSLLEEPLEPFFS
LLSQDHYVILDEPLRLKEQLEFQQKERLEEYTQALAKGEEFYSPEDQFVSYEQFLRYGEK
HPFVLISTLPREIPGVAPKRIFNLNARPLTGFMGKTGILVDEIEHWQKSGHIVNLFVGDE
EHAERMLQGLRDRGALAKKHELHEPVQEGGVYVYSSSLDQGFELPLSKLIVLSEAEIYKR
ERKAAVKRKKAPEKTGQRLQFADLKPGDFVVHVHHGIGQFMGIERIAVGGVEKDYFSVKY
AGQDKLYVPLDQLNFLQKYLGSDAETLPKLYKLGGSEWKKVKAKAKSAIKEMAFDLVKLY
AQREATKGYAFSPDNVWQQEFEEKFPYQETPDQMQCIVEVKQDMMRQRPMDRLLCGDVGY
GKTEVALRAAFKAVMDSKQVAVLVPTTILAQQHFNTFQERFMGYPVSIQMLSRFRSAKEQ
KLILQGLKEGSIDIVVGTHKLVSDSIKFKDLGLLIVDEEQRFGVAHKEKLKTLKANVDVL
TLSATPIPRTLHMSLVGVRDLSIIETPPEDRFPVQTYVAEFRPDVVREAIRREIQRGGQV
FFVHNRVEDMEQVVHFLSQLVPEARYGIAHGQMSEKELEQEMLAFLEHESDVLVCTTIIE
TGLDMPNVNTLIIDEADRLGLGQLYQLRGRVGRSNRRAYSYFLYKPQKVLTEVAEKRLAA
IREFTEFGSGLKIAMRDLEIRGAGNLIGAQQHGHLAALGFELYSQMLKEAVQELKGEQVE
EKIETSIEVQVDAYLPDIYIGERQLKAALYQRMVAIDNEEDLSMMIDELIDRFGTPPREV
ENLLKIVRIKWMASGMKIEQIQQLKQQMVFRFAADPGISGEMLMTMATQSPYPVSFGTTG
NGNLEIKVRLRSVVQEELLEAIHKVLMVFNGIASKTAS
NT seq
3537 nt
NT seq
+upstream
nt +downstream
nt
ttgaaaaccctcagccattatttgcgtttaggcttcgatattgaggcggtggacaaggcg
gtatcctataaggaatggccgcaaatgatctataacttaacaggaagtcagaaacctgcc
tttgccgcccagctgatccaaaagggtaagccggggctgattattacttattcggaggag
cttgcgcaaaaatgggtcaatgacttgcgttcctggcttcccggggaagatgtgctctat
tttccctcctcggaatggctgccctttgaggtcctgggcaaaagccgtgagaccaccatc
gagagaatccgggttctcaaccgtttggcacaggataaccaatgtacggtggtcgtgccg
gctttggcagtgaatcagcggagcttttcccgccgccgttggcaggagtacatcctggaa
ttaaaggaagggacatcctatgatctgaaagatcttgcccagaagctgagcacggcaggt
tacgagcggctggacgtggtggatgggaagggtcaatttgcgattcggggcgggatcatg
gatattgctccactggatggggagcctttacgggtcgagttttttgatgatgaagtggac
tccatccgggtcttcgatctggagacccaaaaatccactgagaccctgaaaagcgttaaa
atccctccggccttggaggttgtgattcgccctgaggaattggagaagctgggctgggag
gttcgggctcaggccaggaagcaagctggacgcttaaaccgcagcggtcgttcggatgtg
gccgagcaggttatgaaacaagcccagaggattgaagaacggttgaaaacaggccgggtg
gatgaaagcatctatccctatctgagccttcttgaggagcccctggagccttttttctca
ctgctttctcaagatcattatgtcattttggatgagccactgcggctgaaagaacagctg
gagttccaacagaaggaaaggcttgaggaatatacccaggctttggccaagggtgaggaa
ttttatagccctgaggatcaatttgtaagctatgaacaattcctgagatatggggaaaag
catccgtttgttttgatctccaccttacccagagaaattcccggggtggctccgaaacgg
attttcaatttaaatgcccggcctttgacgggctttatggggaaaaccgggattttggtg
gatgagattgagcattggcaaaaatccggccatattgtaaatcttttcgttggtgatgaa
gagcacgcagagcggatgctgcaaggtttaagggatcggggagctctggccaaaaagcat
gagctccatgagccggttcaggagggcggagtctatgtctattcatcctcccttgatcag
gggtttgagcttcccttaagcaagctgattgtcctgagtgaggcggagatttataaacgg
gagcgcaaagcggccgtcaagcgcaaaaaggcccctgagaaaacagggcagaggctgcaa
tttgcggatcttaagccgggagactttgtggtccatgttcatcatggcattggtcaattt
atgggcattgagcggattgccgtggggggagtggaaaaggactatttttcggtcaaatat
gccggccaggataagctctatgttcccctggatcagcttaactttttgcagaaatattta
ggaagtgatgcggagaccctgcccaagctttataagctggggggttccgaatggaaaaag
gtcaaggccaaggcgaaaagcgccattaaggaaatggcctttgatttggttaaactttat
gcccagcgggaggcgaccaagggctatgccttttctcccgataatgtctggcagcaggaa
tttgaggagaagttcccctaccaggagaccccggatcaaatgcaatgcatcgtcgaagtc
aaacaggatatgatgcgccagcggcccatggatcgcctgctctgcggggatgtgggctat
ggcaagacggaggtggccctgcgggcggcctttaaggcggttatggacagcaaacaagtg
gcggtcctggttcccaccaccatccttgctcagcagcattttaatacctttcaggagcgt
tttatgggctatcctgtgagcatccagatgctgagccgttttcgctccgccaaggagcag
aaactgattctgcagggattaaaggaaggctccattgatattgtggtggggacccataag
ctggtctcagattcgattaagtttaaggatttgggacttttaatcgttgatgaagagcag
cggtttggggtggcccataaagagaagctgaaaacccttaaagccaatgtggatgtcctc
accctgtcggccacacctattccccgtaccttgcatatgtctctggtaggggtgcgggac
ctcagtatcattgagaccccgccggaggatcgttttcccgtccagacctatgtggcggaa
ttccggccggatgtggtgagagaagccattcgccgggagatccagcgggggggccaggtc
ttctttgtccataaccgtgtggaagatatggagcaggtggttcatttcctcagccagctg
gtccctgaggcccgctacggcattgcccacgggcagatgagcgaaaaagaattggagcag
gagatgctggcttttctggagcatgaaagcgatgtcctggtctgcaccaccatcattgag
acaggcttggatatgcctaatgtcaacaccctgatcattgatgaggcggatcgccttggt
ctggggcagctttatcagctgcggggccgggtagggcgttccaaccggcgggcttattct
tactttttatataaaccccaaaaagtgcttacagaagtggcagaaaagcgcctggcagcc
atacgggaatttaccgagtttggctccggccttaaaattgccatgcgggacttggagatt
cgcggggccgggaatctgattggagcccaacagcatggtcatttagctgccttgggattt
gagctttatagccagatgcttaaggaagcggtacaggagctcaagggtgagcaggtggag
gaaaagatcgagaccagtatcgaggttcaggtggatgcctatctgccggatatctatatt
ggggagcgccagcttaaagcggctctctatcagcggatggtagccatcgataatgaagag
gacctcagcatgatgatcgatgaattgattgaccgtttcggcactccgccccgggaagtg
gagaatcttttgaagattgtccgaattaaatggatggcctcagggatgaagattgaacag
atccagcagctcaagcagcagatggtgttccgctttgcggctgaccccggcatatccggg
gaaatgctgatgaccatggcgacccaatccccctatccggtttcctttggaaccaccggc
aacggcaatcttgagatcaaggtccgtttgcgctccgttgtccaagaggagcttttagaa
gcgatccataaagtgttaatggtatttaatggtattgcgtccaaaacagcatcctga
DBGET
integrated database retrieval system
