Desulfitobacterium hafniense Y51: DSY0713
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Entry
DSY0713 CDS
T00333
Name
(GenBank) hypothetical protein
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
dsy
Desulfitobacterium hafniense Y51
Pathway
dsy03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
dsy00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
DSY0713
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
dsy03019
]
DSY0713
03400 DNA repair and recombination proteins [BR:
dsy03400
]
DSY0713
Enzymes [BR:
dsy01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
DSY0713
Messenger RNA biogenesis [BR:
dsy03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
DSY0713
DNA repair and recombination proteins [BR:
dsy03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
DSY0713
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Pribosyltran
RecQ_Zn_bind
Cas3-like_C_2
HTH_45
TrmB
RNA_pol_Rpc34
DUF4423
RPA_C
ATP-synt_E_2
MCM_WH_arc
HTH_24
Motif
Other DBs
NCBI-ProteinID:
BAE82502
UniProt:
Q24ZP0
LinkDB
All DBs
Position
860343..862481
Genome browser
AA seq
712 aa
AA seq
DB search
MMRSVTHIRKANKGGINMQAQALSLLRKMIGRDAEFHQGQWEAIESVLRGKKTLLVQRTG
WGKSVVYFIGAKLLRERGLGPTIIVSPLLSLMRNQIENAVKIGISAETINSDNTDEWTEI
EEKLKRKAVDILLLSPERLGNKDFTERVLPSIEGGIGMLVVDEAHCISDWGHDFRPDYRR
IVRIIKQLPPNVPLIATTATANQRVVDDIKAQLGDELNSIRGPLTRESLQLQVIKLADQA
ERLAWLHENINKMEGSGIIYCLTVADCNKVAKWLRGKGINALEYHADLSKDAKEKRKLRE
ERERKLLNNEVKALVATVALGMGFDKPDLGFVIHYQRPGSIVRYYQEIGRAGRALDKAYA
ILLNGAEDDEIEEYFIQSAFPTPKEMNAVVNAIEKASLGMTKNKILKELNMSYGRVEKCL
KTLEIEGIIYKEKSSYFRSPVSWLPDSTKSSAITKLRINELEDMRKFVDTEDCYMRYISA
KLDDPYLKNCGKCRNCLDTQFFSEVVSRDNVLEAIQFLKGEYLDIEPRKQWPAGIKAEAT
KKIPEEEQNFTGKALCSYGDAGWGRVVAEDKYRNEYFSDELVDASLALLKNTLLKEDLGW
VTSVPSLRRPLLVKDFAMRLAEKIGLPYIDAIRKTEDTPYQKKMENSYQQCSNALHGFSV
IERVPESPVLLVDDIIDSGWTLTVCGILLRGERSGPVYPFALAKASGLEGGE
NT seq
2139 nt
NT seq
+upstream
nt +downstream
nt
ttgatgagatctgttactcacatccgaaaagcaaataaggggggaataaatatgcaggct
caggcattaagtcttctaagaaaaatgattggcagggatgcggagtttcatcaaggacag
tgggaagctatcgaatcagttcttcggggaaaaaagacactgcttgttcagcgaaccgga
tggggaaagagtgttgtctattttattggtgccaaattattaagggaaagaggtttgggt
ccaactataatcgtcagtccattactatccttaatgagaaatcaaatcgagaatgcagtt
aagatcggaatctccgctgaaaccattaatagcgataatacggatgaatggacagagatt
gaagagaagctgaaaagaaaggcggtcgatattcttcttttatctccggaaagattaggc
aacaaggattttacggaacgtgtccttccttcaatagaaggagggatcggcatgcttgtt
gtggacgaggcccattgtatttcggattggggccatgatttcagaccggattatcgaagg
atagttagaatcattaaacaattgccgcccaatgttcctttgatagcaacaactgccacg
gccaaccaaagagttgttgatgatattaaagctcagctgggggatgagttaaatagtatt
agggggccattgaccagggaatctcttcagttgcaggtgatcaaattagctgaccaggca
gaaaggttagcgtggttgcatgaaaatataaacaagatggaagggtcgggaattatctac
tgtttaaccgttgcggactgcaataaggttgcgaaatggctgcgcggcaagggaatcaat
gctttggaatatcatgccgacttgtcaaaagatgctaaagaaaaaagaaaattgagagag
gaacgggaacggaaattactgaataatgaagtcaaggcactggtcgccacagtagccttg
ggtatgggcttcgataaacccgatctgggttttgttattcactaccaacgtcctggatct
atcgttcggtattatcaggaaatcggacgggcggggagagctttggataaagcttatgcg
attttgctgaatggtgctgaagatgatgagatagaagagtactttattcaatctgctttt
cctacgccaaaagaaatgaatgcggttgtgaatgctatagagaaggcttcattaggaatg
accaaaaacaaaatcctcaaagaattaaatatgtcctacggaagggtagaaaagtgtttg
aaaacattagaaatcgaaggaataatttataaagaaaagagcagttattttcgatctccg
gtcagctggctgccggattcaacgaaaagcagtgcaatcactaaactccgaataaatgaa
ctggaagatatgagaaagttcgtcgatacggaagactgctacatgcgttacatttccgcc
aagcttgatgatccttatttaaaaaactgtggtaaatgccgtaactgcctggatactcaa
tttttcagtgaagtcgtctctcgggataatgtattggaggcaattcagtttttaaaagga
gagtatctggatattgagcccagaaagcaatggcctgctggaattaaagctgaagcaact
aaaaaaatacctgaagaagagcaaaactttactggaaaggcactatgttcatatggcgat
gcaggatggggaagggtagttgccgaagataaataccgcaatgagtattttagtgatgaa
ctggttgatgcttctttggccttattaaaaaacacattgttaaaagaagacttgggatgg
gtaacatcagtgccatcgcttcgcagacctttactcgttaaagattttgccatgagactt
gctgaaaaaataggcttaccctacattgatgcaataagaaagactgaagacacaccatat
caaaagaaaatggaaaacagctatcaacagtgcagcaatgccctgcatggtttttcagtt
attgagagggtccccgagtctcctgtccttttggtggatgatatcatcgactctggttgg
actttaacggtttgtgggatattattaaggggagagagatctggaccggtatatccattt
gccttagcaaaggcgtcagggttagaaggtggggaataa
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