Desulfitobacterium hafniense Y51: DSY0718
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Entry
DSY0718 CDS
T00333
Name
(GenBank) hypothetical protein
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
dsy
Desulfitobacterium hafniense Y51
Pathway
dsy03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
dsy00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
DSY0718
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
dsy03019
]
DSY0718
03400 DNA repair and recombination proteins [BR:
dsy03400
]
DSY0718
Enzymes [BR:
dsy01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
DSY0718
Messenger RNA biogenesis [BR:
dsy03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
DSY0718
DNA repair and recombination proteins [BR:
dsy03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
DSY0718
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
DEAD
AAA_19
UvrD_C
Helicase_C
UvrD_C_2
Viral_helicase1
AAA_30
ResIII
AAA_22
PhoH
AAA_16
SLFN-g3_helicase
AAA_12
Motif
Other DBs
NCBI-ProteinID:
BAE82507
UniProt:
Q24ZN5
LinkDB
All DBs
Position
866302..871197
Genome browser
AA seq
1631 aa
AA seq
DB search
MTKIRRILSKTERYLKVTNTAGLTEKGGKNVKPITFIDTEIEPRSKKILDIGGIKGDGST
FHSASVPDFTAFLRGSEYLGGHNIFHHDLKYLDNTLQAAGLHTAKVIDTLWLSPLLFPAR
PYHALLKDDKLQTEEANNPLNDAIKARDLFFDEVTAFQQADPLLKVIFHSLLKGQKEFSA
FFHYMGYQGSSLFPEKLIRDKFQGRICAQADLTGLIAHYPVELAYCLALLNTNDRYAITP
PWVLKHYPSTERIMYLLRNNPCLEGCVYCHEALDIHKGLKRFFGFDSYRTYGGEPLQEKA
VQAAVDNKSLLAVFPTGGGKSITFQIPALISGAAAKGLTVVISPLQSLMKDQVDNLERAG
ITEAVTINGLLDPIERAKSYERVENGSASLLYISPESLRSKTIESLLLNRNVVRFVIDEA
HCFSAWGQDFRVDYLYIGEFIRSLQEKKNLSEGIPVSCFTATAKPKVIEDIRGYFKEKLD
LDLELFSANASRVNLRYEVFAKSEDEKYNALRDLLEGKPCPTIVYVTRTHTAENLAQRLN
QDGYQAGAYHGKMDKQEKSTNQDAFIQGQVRIMVATSAFGMGVDKKDVGMVIHYEISNSL
ENYIQEAGRAGRDETLSADCYVLFNDEDLGKHFVLLNQTKLSIQEIQQVWKAIKELTRFR
PRVSQSALEIARKAGWDDGIMDIETRVRTAVTALEEAGYIKRGQNVPRIFANSILSRNVM
EAIGKIESSPRMNEKQKGQAQRIIKKLFSSKSRKQLPGEEAESRVDYISDHLGIPKEEVI
AAVNLLREEKILADHQDLAAFLKKTEHRNRSLNILKTFYQLEKFLLTVIENQERIFHIKE
LNEQAQEMGCPEATPNKLRTLLNVWTIQNWIKRQTTGSSRNHLSLLALEEKEVLEAKLLK
RYELAQFILDHLFAKSSTALTGEEARKEEVLVEFSVLELKEAFAERFTLFRSQTSVKEIE
DALFYLSRIEAVKIEGGFMITYQGLTIERLEQNNRKNYKAEDYRQLEQFYENKVQQVHIV
GEYARKMIRDYQAALQFVDDYFRMNFSLFLNKYFKGSRQNEIKRTITPAKFQQLFGELSP
TQLDIINDRTSRHIVVAAGPGSGKTRILVHKLAALLLMEDVKTEQLLMVTFSRAAAHEFK
KRLLKLIGNTAHYVEIKTFHSYCFDLLGKVGTVEKSAEIIQEAIKRIKNREVEPGRITKT
VLVIDEAQDMDAHEYALIQALMEHNEEMRVIAVGDDDQNIYEFRGASSEYMVNLILEKQA
TLYELVENYRSKSNLVQFSNQFAARIPLRLKDTPIIPKQTDLGKIKLVRYHSNHLLTPLV
EDMLREGPTGTTCVLTKTNEEALQITGLLVKNSLQAKLIQSNDGFNLYNLWEVRFFLSSL
GLTEGVFTISPEAWTGAKGKLKEKFARSLNYEVCLSLLKEFEAACPDTKYTSDLEMFIRE
SKLEDFLGGDRETIFVSTIHKAKGREFDNVYLLLEHFSLETEEAVRQLYVGMTRAKRNLM
IHCNDSYLDGISAEGLERLEDEEDYLPPRLLALQLTFRDVWLDFFLYPQHWQRIGLLNSG
DELVFDGEGCRNPAGQLVLKFSQRFKDQLESVWQKGYVPGKARIRFIVYWQKEGTEREVR
IVLPELYLEKK
NT seq
4896 nt
NT seq
+upstream
nt +downstream
nt
ttgacaaaaatcaggagaatattatcgaaaacggaaagatacctgaaagtgacaaataca
gcaggtctgacggaaaaggggggaaagaacgtgaagccgatcacctttatcgacaccgaa
atcgagccgagaagcaaaaagatcctggacatcggcggcattaaaggggacggcagtacc
tttcactccgcttcagtgcctgactttactgcgtttctgcgaggcagcgagtatcttggc
gggcataacatctttcaccacgatctcaagtatctggacaacaccctgcaggccgcgggt
ctccacacggccaaagtcatcgacaccctctggctttctccccttttgttccccgcccgg
ccctatcatgctctgcttaaggacgataagctgcaaacggaagaggccaacaatcccctc
aatgatgccatcaaagccagggacttattctttgatgaggtgaccgcttttcagcaggcg
gacccccttcttaaagtcatttttcatagccttttaaagggacaaaaggagttcagcgca
ttcttccactatatgggctatcaggggagttccttatttcctgagaaattgatccgggac
aagtttcagggcaggatctgcgcccaagccgacctgaccggacttatagcccactatccc
gtggagctggcctattgcctggccttgctcaataccaatgatcgctatgccatcaccccg
ccctgggtcttaaaacattacccttctaccgagcggatcatgtatttattgagaaacaac
ccctgtctggaggggtgcgtttactgccatgaagccttggacattcataaaggactgaag
cggttcttcggctttgattcctaccggacttatggaggggagcccctccaggaaaaagcg
gttcaggcggctgtggacaataaatccctgttggcggtttttcccaccggaggggggaag
tctataaccttccagattccggccctgatcagcggggccgcggccaaagggctgacggtg
gtcatttcccctttgcagtccctgatgaaggaccaggtggataatctggaaagagcgggg
atcaccgaggctgtgaccatcaatggtttgctggaccccatcgaaagggctaagtcctac
gaacgggtggagaacggttccgcttctcttctctatatttccccggagtccctgcgttcc
aagactattgaatccttgctgctgaatcggaatgtggtccgtttcgtgatcgacgaggct
cattgcttttcagcctggggccaggacttccgggtggattatctctatatcggggagttc
atcagatcccttcaggaaaagaagaatctttcggaaggcatccccgtctcctgcttcacg
gccacagccaagcccaaggtcatcgaggatatccgggggtattttaaggagaagctggac
ctggatctggagctcttttcagccaatgcctcccgggtcaatctgcgctacgaagtgttt
gcgaaaagtgaagacgaaaaatacaatgccctgcgggatttgctggaaggaaaaccctgc
cccaccattgtctatgtgacccgcacccatactgccgagaacttggcgcagcggttaaac
caagacggctatcaggccggagcgtatcatggcaagatggataagcaggaaaaatccacc
aaccaggatgcctttatccagggccaggtccggatcatggtggcaacctccgcctttggc
atgggagtggacaagaaagatgtgggcatggtcattcactatgagatctccaattccctg
gagaattatattcaggaagcagggcgggcaggccgggacgaaaccctctctgccgactgt
tatgtcctgttcaatgatgaggatttgggcaagcatttcgtgctgctcaaccaaaccaaa
ctcagcatccaggaaatccagcaggtctggaaggcgattaaagagctgacccggttccgg
cccagggtctcccaatccgctttggagattgcccgcaaggccggctgggacgatggaatc
atggatatcgaaaccagggtgagaacggcggttactgcgttggaggaagccggatatatc
aaacggggccagaatgtaccgaggatttttgccaacagcattctttcccgcaatgtcatg
gaagctatcgggaagatcgaaagctccccaaggatgaacgaaaagcaaaaagggcaggca
caacggatcatcaagaagcttttttccagcaaaagcagaaagcagctgccgggggaagaa
gcagaatccagagtggattatatctccgaccacttgggcattcccaaagaggaagtcatc
gcggcggtcaatctgctgcgggaggaaaagatcctggccgaccatcaggatttggccgcc
ttccttaaaaaaacagaacaccgcaaccgttccctgaatatcctcaaaactttttatcag
ttggagaaatttcttttaacggtgatcgaaaatcaggaaaggatctttcatattaaagag
ctgaatgaacaggcccaggagatgggttgtcctgaggccacccccaacaagctgagaacc
ctcttgaatgtttggaccatccagaactggatcaagcgtcaaaccacaggctcttcccgg
aaccatctctccctgctggccctcgaggaaaaggaagttctggaggccaagctgttgaag
cgttatgagctggcccaatttatcctggatcatctttttgccaagagcagtacggccctc
accggtgaggaagcccggaaggaagaggttctggtggagttctccgtgctggagctgaaa
gaagcctttgcggaaaggttcaccctgttccgcagccaaacctcggtcaaggaaattgag
gacgctctcttttacttaagcaggatcgaagctgtcaagatcgagggcggctttatgatc
acctatcaggggctgaccattgagcggctggagcagaacaaccgcaaaaattataaagcc
gaggattaccggcagctggagcagttttatgagaacaaagtccagcaagtccatatcgtc
ggcgaatatgcccggaaaatgatccgggattatcaggccgccctgcaatttgtggatgat
tacttccgcatgaatttcagcctgtttttaaataagtactttaaaggcagccggcaaaac
gaaatcaagcgcacgattaccccggccaaattccagcagcttttcggcgaattatccccc
acccaattggacatcatcaatgaccggacatcccggcatatcgtcgtggcagccggcccc
ggcagcggcaagacccggattctggtgcataaactggccgccctcctcctgatggaagat
gtcaagaccgagcaattgctgatggtgaccttttccagagcagcggcccatgaattcaaa
aagcgtttgttaaaactgattggcaatacggcccattatgtggagatcaaaaccttccat
tcctactgctttgatttattggggaaagtaggaaccgtggagaaatccgctgagatcatt
caggaagccatcaaacggattaagaatagggaagtggaaccgggcagaatcacgaaaacc
gtgttggttatcgatgaagcccaggatatggatgcccatgagtacgccttaattcaggcc
ttgatggagcataacgaggagatgcgggtcatcgccgtgggggatgacgatcagaatatc
tatgaattcagaggggccagttcggagtatatggtgaatctgatcctggagaagcaggcg
accctgtacgaactggtggaaaactaccgcagcaaaagcaatcttgtgcagttcagcaat
caattcgctgcgaggattcctctccgtttgaaggatacgccgattatccccaagcaaacg
gatctggggaaaatcaagctggtacgctatcatagcaatcatcttcttaccccgctggtg
gaggacatgctcagggaaggacctacgggcaccacctgtgtcctgaccaaaacgaatgaa
gaagccttgcagattaccggactgctggtgaagaacagtctccaggccaagcttattcaa
tccaatgacgggtttaacctgtataatctatgggaggtccgcttttttctgagctccctt
ggtttgaccgagggggtattcaccatcagccctgaggcctggactggggccaagggcaag
ctcaaagaaaaatttgcccgcagtttgaattacgaagtctgtctcagtctgctcaaggag
ttcgaggcggcttgccctgacaccaaatacacatcggatctggagatgttcatccgggaa
tccaagctggaggactttctggggggagatagggaaaccatctttgtctccaccattcac
aaggctaaaggccgggagtttgacaatgtctatctcctgctggagcacttcagcctggaa
acagaggaggcggtgcggcagctgtatgtggggatgaccagagccaaacgcaatctgatg
atccactgcaatgacagctatctggatgggatttccgcagaggggctggagcgccttgag
gatgaggaagactatctgccgccccgtctcctggccttgcagctgaccttccgggatgtc
tggctggactttttcctttatcctcagcattggcaaaggatcggactgctgaacagcggg
gatgagctggtttttgacggagaagggtgccggaatcctgccggacagctggtgctgaag
ttctctcaaaggtttaaagaccagctggaatcggtttggcagaaaggctatgttcccggt
aaggcaagaatccgttttatcgtttattggcagaaagaaggaacagagcgggaagtgagg
attgtgctgccggagctttatttggagaagaaatga
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integrated database retrieval system
