Desulfitobacterium hafniense Y51: DSY2497
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Entry
DSY2497 CDS
T00333
Name
(GenBank) hypothetical protein
KO
K12574
ribonuclease J [EC:3.1.-.-]
Organism
dsy
Desulfitobacterium hafniense Y51
Pathway
dsy03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
dsy00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
DSY2497
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
dsy03019
]
DSY2497
Messenger RNA biogenesis [BR:
dsy03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
DSY2497
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_J_b_CASP
RNase_J_C
RMMBL
Lactamase_B
Lactamase_B_2
Anti-Pycsar_Apyc1
Lactamase_B_6
Motif
Other DBs
NCBI-ProteinID:
BAE84286
UniProt:
Q24UK6
LinkDB
All DBs
Position
complement(2862508..2864172)
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AA seq
554 aa
AA seq
DB search
MPKEHKVQIIPLGGLGEIGKNMTVIRYDNQMIVIDAGLAFPEDEMLGIDIVIPDYSYLLE
HKDMVQGILVTHGHEDHIGALPYLLKDLDAPIFATRLTLGLIQSKLKEGNLDNIKATVVR
PRDTVKLGVFKVEFLSVNHSIPDAVALAIHTPLGTIVHTGDFKVDHTPVMGEKIDIHKFA
ELGDKGVLCLMSDSTNVERPGFTMSERSVGHMFEEAFNSAKDRIIIASFATNVHRLQQVI
TAAHHTNRKVAVVGRSMVNTVAIASELGYLDIPEDTLVDVDEVVNLPGNQACILTTGSQG
EPMSALTRMAMSDHRRIEIQPGDTVIISANPIPGNEKSVSKTIDLLFKLGANVIYESYQG
MHVSGHASQEELKLMLNMIRPQYFIPVHGEYRMLIKHAKLAEQMGISRENTFVADNGTII
EFTRHGASIAGKVPAGKVLIDGLGVGDVGNIVLRDRKQLSQDGILIVVMTISRSSGAIVA
GPDVVTRGFVYVRESESMLEEAKDKVRQTMNRLRENHVTEWAVLKGQVRETLSKHFYEKT
RRRPMILPIIQEVE
NT seq
1665 nt
NT seq
+upstream
nt +downstream
nt
ttgccaaaagaacataaggttcagatcatacctttaggcggtttaggcgagatcggtaaa
aatatgaccgtgattcgttacgataatcaaatgatcgttatagatgcgggattggcattt
cccgaagatgagatgctggggatagacatagttataccagattattcttatctgctggag
cataaggacatggttcaagggattctagtcacccatggtcatgaagatcatattggtgca
ctgccttatctcctcaaagacttggatgctcctatttttgctacacgattaaccttagga
ctcattcaatccaaattaaaagaaggaaatctcgataatatcaaggccacggtggtccgt
cccagagatacggttaaacttggagtcttcaaagtcgagtttctgagtgtgaatcatagt
attccggatgcagtggcactggccatccatactcctctgggtactattgttcatactggg
gatttcaaagtggatcatacccctgtcatgggtgaaaagattgatattcataagttcgct
gaactgggcgataaaggggtcctttgcctgatgtccgacagtacgaatgtggaacggcct
ggttttaccatgtctgaacgcagtgtgggacacatgttcgaggaagcatttaatagtgcc
aaagacagaatcatcattgccagctttgcaaccaatgtccacaggcttcagcaagtgatt
acggcagcgcaccatactaaccgcaaggttgctgtggtcggtcggagtatggttaacaca
gtagccatagcctctgagttagggtatttggatataccggaggatactctggtcgatgtg
gatgaagtggtgaacctgccgggcaatcaagcttgtattcttaccacaggcagtcagggt
gagcccatgtcggctctgacccggatggcgatgagcgatcatcggcgtattgaaatccag
cccggcgatacagtaatcatatctgccaatcctatccccggtaatgagaaatcagtatca
aaaaccatcgacctcttgtttaagctcggtgccaatgtgatctatgaatcttatcaaggc
atgcacgtttccgggcacgccagccaggaagagcttaagctgatgcttaatatgattcgt
cctcagtatttcattcctgttcatggtgagtaccgtatgcttattaagcatgctaaattg
gccgagcaaatgggaatttccagagagaacacttttgttgctgataatggcacgattatt
gagttcacccgccatggagcgagtatagcgggaaaagttcctgctgggaaagtgctgatt
gatggacttggtgtcggcgatgtcggcaatattgttctaagagatcggaaacagctctct
caagatggcattttaatcgtggttatgacgattagccgcagctccggggctattgtggca
ggccccgatgtggtaacacgtggctttgtctatgtacgggaatcggaatccatgctcgaa
gaagcaaaagataaagtaagacaaaccatgaaccgtctcagggagaatcatgttacagaa
tgggctgttctgaaaggacaagttcgggaaaccttaagcaaacatttctacgaaaagacc
cggaggcgcccgatgattctgccaattatccaggaagtagaataa
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