Desulfitobacterium hafniense Y51: DSY3754
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Entry
DSY3754 CDS
T00333
Name
(GenBank) hypothetical protein
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
dsy
Desulfitobacterium hafniense Y51
Pathway
dsy03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
dsy00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
DSY3754
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
dsy03019
]
DSY3754
Enzymes [BR:
dsy01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
DSY3754
Messenger RNA biogenesis [BR:
dsy03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
DSY3754
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
ERCC3_RAD25_C
Sox17_18_mid
Utp25_C
Cas3-like_C_2
HEM4
Sacchrp_dh_NADP
P-loop_SecA
UvrA_inter
Motif
Other DBs
NCBI-ProteinID:
BAE85543
UniProt:
Q24QZ9
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All DBs
Position
complement(4279601..4281037)
Genome browser
AA seq
478 aa
AA seq
DB search
MRKPGPFNFDNQVIRYCLGSGIIRDQGNFLYNDTKCKKKTTNFINIKGLKVKQVLLNELK
IINPIQKALAAQGYSEATPIQAEAIPHLLEGLDLLGCAQTGTGKTAAFAIPILQSLAMGQ
GLLKGKRQIRALVLAPTRELATQIAESFTAYGVNLPLRTLVIFGGVGQAPQTRKLEKGID
ILVATPGRLLDLINQGFIDLSHVEHFVLDETDQMLDMGMLHDVKRIITYLPRERQNMLFS
ATMPVEIEKLADTILKGPVKIAMTPEFSPLDIIEQEVYFVDKANKAALLTYWLKNNEYDS
VLVFSRTKHGADKIVKELNKKGFTAVAIHGNKSQANREQALHAFKKRKTRILVATDIAAR
GLDIQELSHVINYNLPEVPETYIHRIGRTGRAGLGGKAITFCDFEEKPLLRDIQKRIGKT
LPEVKEHPYPLVNTVIVPKAKTSQQAAAARPQKPATAKTAAYSQQGAHRAKPNPRKIL
NT seq
1437 nt
NT seq
+upstream
nt +downstream
nt
ttgaggaagccgggtccctttaactttgataatcaggtaatcaggtattgcctggggagc
gggattatcagagatcaagggaactttctttataatgacacaaagtgtaagaaaaaaacg
accaattttatcaatattaaaggattaaaggtgaaacaagtgttattaaacgaactaaag
ataatcaatccgattcaaaaggcgctggcagcgcaaggatattcagaggcaacccctatc
caggctgaggcgattccgcacctgcttgaggggctggatttgttgggatgtgcccaaaca
ggcacgggcaagaccgccgcttttgcaattccgatcttgcaaagccttgccatggggcag
ggtttgctaaaaggcaaaagacagatcagagccttagttctcgcaccgacccgggaactg
gcgactcaaatcgcagagtccttcactgcttacggagtcaacctgcccctaaggacgctg
gtcatttttggcggtgtagggcaggccccgcaaacaaggaaactggaaaagggaattgat
atcctggtggcaaccccgggcagactgcttgacttaatcaaccaaggatttatcgattta
agccatgtggaacattttgtgcttgatgagactgatcaaatgctggatatgggtatgctt
cacgacgtaaaaaggattatcacttacctgcccagggaaaggcagaacatgttgttttca
gcaactatgccggttgaaatagaaaagctcgcggataccatcttaaaaggacctgtgaag
attgcaatgacgccggaattttctccgcttgatatcattgaacaggaagtttattttgtg
gataaggccaacaaggcggctctgttgacttattggctgaaaaacaacgaatatgattct
gtgctcgtattttcgcggacaaaacatggtgcagataaaatagtaaaagaactgaataaa
aagggatttacagcagtagcaattcacggaaacaaatctcaagccaacagggagcaggct
ttgcatgcttttaaaaaacggaaaacaagaattcttgttgcaacagatattgctgcccgc
gggctggatatccaagaactttctcatgtcatcaattacaacctgccggaggttcctgaa
acctatattcacaggattggtcgtacaggcagagccggcctcggcggcaaggcaattacg
ttttgtgactttgaagaaaagcccttattgcgcgacattcaaaaacgaatcggtaaaaca
ttacccgaagtgaaggagcatccctatccattggtcaacaccgttatcgtgccaaaagca
aagacatctcagcaagcagctgcggcaaggcctcaaaagcccgccacagccaagacggca
gcctattcccaacaaggtgcacatagagcaaagccaaatccccggaagatcttatag
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