Dyella terrae: DYST_01439
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Entry
DYST_01439 CDS
T08348
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
dta
Dyella terrae
Pathway
dta03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
dta00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
DYST_01439
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
dta03400
]
DYST_01439
Enzymes [BR:
dta01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
DYST_01439
DNA repair and recombination proteins [BR:
dta03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
DYST_01439
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
UvrB_inter
DEAD
MFD_D3
Helicase_C
CarD_TRCF_RID
ResIII
Cas3-like_C_2
UB2H
AroM
AAA_30
ERCC3_RAD25_C
AAA_22
RecG_dom3_C
Glyco_tran_WecG
Motif
Other DBs
NCBI-ProteinID:
ULU24523
LinkDB
All DBs
Position
1666873..1670328
Genome browser
AA seq
1151 aa
AA seq
DB search
MANTIPHPPLPTTPKQRRFWTSPHGSSRALLVAEAARTHQGLLVAVTRDTQRASALEDEL
RVFAGNLPVLHFPDWETLPYDVFSPHPDIVSQRIATLYELPNVQRGVLVVPIATLMQRIA
PRSHITGAGLVVRKKQKLDLAAEQRRLEAAGYRNVPQVGEPGDFAVRGALIDIFPMGAVQ
PYRIELFDDEVESIRSFDPETQRSQQQVDHIELLPAREFPLTENAAKDFRTRLRERFPID
VRRCPLYQDMKEGVTPGGIEYYLPMFFEQTATLFDYLADNAVFLLGEGALESADQFWTQT
GERYDQRAHDIERPVLPPAELYLAPELLREQLNKRLRVEVVESGHEHAVPSGTQPAPELP
LNRKGEEPGTSLRHFLSSYPGRVLITADSAGRREALIEQLASAGLKPETIDGWQAFLTGS
DKLRLAITIAGLEQGFALKEPAFTVLTERELFGERVRTDRKRRRGAARDPESIIRDLTEL
TIGAPIVHVDHGVGRYQGLVSMELGGMEGEFLTIEYAKGDKLYVPVAQLGLVSRYTGTAP
ELAPLHSLGGDAWERARRKAAEKVRDVAAELLAIYAQREARGGESMSIDRQMVEEFGATF
PFEETPDQEQAIDSVLKDLAAPRAMDRVICGDVGFGKTEVALRAAFAAATAGRQVAVLVP
TTLLAQQHYRNFADRFADWPVRVDVLSRFKSTKEVNEALKRLTDGQIDVIVGTHKLLSPE
IKFKNLGLVIVDEEQRFGVRQKEQLKKLRAEVDLLTMTATPIPRTLNMAMSGLRDLSLIA
TPPAHRMAVRTFIAQWEPALVREAFQRELQRGGQVYFLHNEVDTIERTARELEELIPEAR
IGIAHGQMAERDLERVMADFHRQRFNVLVCTTIIETGIDIPTANTIIINRADRFGLAQLH
QLRGRVGRSHHRAYAYLVVPDRKAMTADAEKRLEAIASLEELGAGFTLATHDLEIRGAGE
LLGDEQSGQIQEIGFGLYTELLERAVRALKSGKVPDFDLSSEHETEVELHLPALIPDDYL
PDVHTRLTLYKRIASARNEDHLRDLQVEMIDRFGLLPDPAKQLFAVAQLKLMSTPLGVRK
LDFGANGGRITFRDKPELDPMAIIRLIQSQPRVYKLDGQDKLKVNLELPGATERIRAAQE
VLVQLGARRPG
NT seq
3456 nt
NT seq
+upstream
nt +downstream
nt
atggctaatacgattccccacccgcccctgcccaccacccccaagcagcgtcgcttctgg
acgtcgccgcacggctcttctcgcgccctgctggtcgctgaagcggcgcgcacgcaccag
gggctgttggtcgctgtgacgcgcgatacgcaacgcgcgagcgcgctggaagacgagctg
cgtgtgttcgcgggcaacctgccggtgctgcacttccctgactgggaaacgttgccctac
gacgtgttcagtccacacccggacatcgtctcgcaacgcatcgccaccctgtacgagttg
ccgaatgtgcaacgcggcgtgctggtggtgcctatcgcaacgctgatgcagcgcatcgca
ccacgtagccacatcaccggcgcgggcttggtggtgaggaagaagcagaagctcgacctc
gccgctgagcagcgcaggctcgaggccgctggctatcgcaacgtgccgcaagtaggtgag
cccggcgacttcgccgtgcgcggcgcgctgatcgacatcttcccgatgggcgccgtccag
ccgtaccgcattgagctgttcgacgacgaagtggaatccatccgcagcttcgatccggaa
acgcagcgctcgcaacagcaggtagaccatatcgaattgctgcccgcgcgcgaatttccg
ctcacggagaacgccgccaaggatttccgcacgcgactgcgcgagcgcttcccgatcgac
gtgcgccgctgtccgctctaccaggacatgaaggaaggcgtgacgccgggcggcatcgag
tactacctgccgatgttcttcgagcagacggccacgctgtttgactacctcgccgataac
gccgtattcctgctcggggaaggtgcactggaatcagcggaccagttctggacgcagacc
ggcgaacgctacgaccagcgcgcgcacgacatcgagcgccccgtactgccgccggcggag
ctgtaccttgctccggaactgctgcgcgaacagctcaacaagcgcctgcgcgtggaagtg
gtggaaagcggccacgaacatgccgtgcccagcggcacacaacccgcgccggaactgccg
ctcaaccgcaagggcgaggagcccggcacgtcgctgcgccacttcctgtcgagctacccg
ggacgggtgctgatcacggccgactcggcaggccgccgcgaagccctgatcgaacagctc
gccagcgcaggtttgaagcccgaaaccatcgacggctggcaagcgtttcttaccggcagc
gacaagctgcgacttgccatcaccattgcagggctggaacagggcttcgcccttaaggaa
cccgcgttcaccgtgcttaccgagcgcgagctgttcggcgagcgcgtacgtaccgaccgc
aagcgccgccgtggcgctgcgcgcgatccagaaagcatcatccgcgacctcaccgaactg
accatcggtgcgcccatcgttcacgtcgaccacggcgtgggccgataccagggtctggtg
tcgatggaactgggcggcatggaaggtgagttcctcaccatcgagtacgccaagggcgac
aagctgtacgtgcccgtggcacagctcggtttggtcagccgctataccggcaccgcgccc
gaactcgcaccgctgcattcgctgggtggcgacgcgtgggaacgcgcacgccgcaaggcc
gccgagaaagtgcgcgacgtcgccgccgaactgctggccatctacgcgcaacgtgaagca
cgcggcggcgagtcgatgtcgatcgaccgccagatggtggaggaattcggtgccaccttc
ccattcgaggaaacgcctgaccaggaacaggccatcgattcggtactgaaggacctcgcc
gctccgcgcgccatggatcgcgtgatctgcggcgacgtgggcttcggcaaaaccgaagtg
gcgttgcgcgccgccttcgccgccgccacggcaggtcgccaggtggcggtgctcgtaccc
accaccctgctcgcgcaacagcactaccgcaatttcgccgaccgcttcgccgattggccg
gtacgcgtggacgtgctatcgcgcttcaagtcgaccaaggaagtgaacgaggcgctcaag
cgtcttaccgatgggcagatcgacgtgatcgtgggcacccacaagctgctctcgcccgaa
atcaagttcaagaatctaggcctggtcatcgtcgacgaagaacagcgcttcggcgtacgc
cagaaggagcagctgaagaagctgcgcgccgaggtggatctgctcaccatgacggccacg
ccgattccgcgcacgctgaatatggcgatgagcggcctgcgcgacctctcgctgatcgct
accccgcccgcgcatcgcatggcggtgcgcaccttcatcgcgcagtgggagccggcgctg
gtccgcgaagctttccagcgtgagcttcaacgtggcggtcaggtgtacttcctgcacaac
gaggtagacaccatcgagcgcactgcacgcgagctggaggaactgattccggaagcgcgc
atcggcatcgcccacggccagatggccgaacgcgatctggaacgcgtgatggcggatttc
catcgccagcgtttcaacgtgctggtatgcaccaccatcatcgaaaccggcatcgacatt
cccaccgccaacaccatcatcatcaatcgcgctgaccgcttcggcctcgcacagttgcac
cagttgcgtggccgcgtcggccgttcgcaccatcgtgcctacgcctacctcgtggtaccc
gatcgcaaggccatgacggccgacgcggagaagcggctggaagccatcgcctcgctggaa
gaactgggcgcaggcttcacactcgccacgcacgatttggaaattcgcggtgcgggcgag
ctgttgggcgatgagcagtccggtcagatccaggaaatcggcttcggcctgtacaccgaa
ctgctggagcgtgccgtgcgcgcactgaagtccggcaaggtgcccgactttgacctcagc
agcgagcatgagaccgaagtcgaactgcacctgccagcactgattcccgacgactacctg
ccggacgtccacacacgcctgaccttgtacaagcgcatcgccagtgctcgcaacgaggac
cacctgcgtgaccttcaggtcgagatgatcgatcgattcgggctgcttcccgatccagcc
aagcagttgttcgcggtggcacaattgaagttgatgtccacaccgttgggcgttcgcaag
ttggacttcggcgccaatggcggacgcatcaccttccgcgacaagccggagctggatccg
atggcgatcattcgcctgatccagagtcagccgcgcgtgtacaagctggatgggcaggac
aagctcaaggtgaatctggagttgcccggtgcgactgagcgtattcgcgcggcgcaggaa
gtgctggtgcagttgggcgcgcgacggccggggtga
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