Dyella terrae: DYST_02307
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Entry
DYST_02307 CDS
T08348
Name
(GenBank) DEAD/DEAH box helicase
KO
K03732
ATP-dependent RNA helicase RhlB [EC:
5.6.2.7
]
Organism
dta
Dyella terrae
Pathway
dta03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
dta00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
DYST_02307
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
dta03019
]
DYST_02307
Enzymes [BR:
dta01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
DYST_02307
Messenger RNA biogenesis [BR:
dta03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
DYST_02307
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_11
AAA_22
Motif
Other DBs
NCBI-ProteinID:
ULU25380
LinkDB
All DBs
Position
complement(2599349..2601067)
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AA seq
572 aa
AA seq
DB search
MSQTVLTDTFFTNFDLHPLLQQGLDEAGFTRCTPIQALTLPVALTGRDVAGQAQTGTGKT
CAFLVAMMNRLLTTPAVAERKDSDPRALVIAPTRELAIQIEKDAKSIGRYTGLRTALIYG
GVDYDKQRQQLKDGCDIIIATPGRLLDYFKQHVFSLDAVEVMVIDEADRMFDLGFIKDVR
FIFRRLPAREQRQVLLFSATLSHRVLELAYEHMHNAEKLEVETENVTADRVRQVVYFPAK
EEKMPLLLNLLDRTKAERSIIFVNTKAAAEKITDRLKRYGYRVGALSGDVPQLKRQKLLQ
RFQEGQLDILVCTDVAARGLHIPAVSHVFNFDLPQDAEDYVHRIGRTARLGAEGDAISFA
CDLYAMSLPDIETYIGQRIPVANIEAEMLVMPQPREQDAQYMAEVAADSAAFGDKVEQRE
KDGSPRKGSRNGSGRSGDRPRGDKPRGPRKPRHEAPAEGAEEPVKTETAPAQASAQGEAT
DGAERKRRRRRGGRNRRREGDAPAAEAAANPAGEGNRQLRGERRPPRERGNAENNHSRPS
RHVAITSGKQAEQEAPKKVGFFRRLSRFFTGR
NT seq
1719 nt
NT seq
+upstream
nt +downstream
nt
atgtcccaaaccgttctcactgatacctttttcaccaacttcgatctccatccgctgctc
cagcaaggcctcgacgaggcgggtttcacccgctgcacgccaatccaggcgctgaccctc
ccggtcgcgctgacgggtcgcgacgtcgccggtcaggcgcagacgggcacgggtaagacc
tgcgccttcctggtggcgatgatgaatcgcctgctgaccacgccggccgtggccgagcgc
aaggacagcgacccgcgcgcactggtgatcgcaccgacccgcgagctggccatccagatc
gagaaggacgccaagtccatcggccgctacaccggcctgcgcaccgcgctcatctacggc
ggcgtcgattacgacaagcagcgccagcagctcaaggatggctgcgacatcatcatcgcc
acgccgggccgtctgctcgattacttcaagcagcacgtgttcagcctcgacgccgtcgag
gtgatggtgatcgacgaggcggaccgcatgttcgacctcggcttcatcaaggacgtgcgc
ttcatcttccgccgcctgccggcgcgcgagcagcgccaggtgctgctgttctccgccacg
ctcagccatcgcgtgctggagctggcctacgagcacatgcacaacgcggagaagctggaa
gtggagacggaaaacgtcaccgctgaccgcgtgcgccaggtcgtctacttccccgcgaag
gaagagaagatgccgctgctgctcaacctgctcgaccgtaccaaggccgagcgcagcatc
atcttcgtcaacaccaaggccgccgcggaaaagatcaccgatcgcctcaagcgttacggt
taccgcgtgggcgcgctgtcgggcgatgtgccgcagctgaagcgtcagaagttgttgcag
cgtttccaggaaggtcagctcgacattctggtgtgcaccgatgtcgccgcgcgcggcctg
cacatcccggccgtcagccacgtcttcaacttcgatctgccgcaggacgcggaagactac
gtgcaccgcatcggccgtaccgcgcgccttggtgccgagggcgacgcgatcagcttcgcc
tgcgatctctacgcgatgagcttgccggatatcgaaacctatattggccagcgcatcccg
gtggccaatatcgaagccgagatgctggtgatgccgcagccgcgcgagcaggacgcgcag
tacatggccgaggtggctgccgacagcgccgcgttcggcgacaaggtggagcagcgcgag
aaagacggttccccgcgcaagggttcgcgtaacggcagcggtcgcagtggcgatcgtccg
cgcggcgacaagcctcgcggacctcggaagccccgccatgaagcgcctgctgaaggcgct
gaagaaccggtgaaaacggaaaccgcaccggcacaggcgtcggcgcagggcgaagctacg
gatggtgcagagcgcaagcgccgccgtcgccgtggtggtcgtaaccgtcgtcgcgaaggc
gatgcgccggccgccgaggccgccgccaacccggccggggaaggtaatcgtcagctgcgc
ggcgagcgtcgcccaccgcgcgagcgtggcaacgccgagaacaatcactcgcgtccgtcg
cgccacgttgccatcacctcgggcaagcaggctgagcaggaagcaccgaagaaggtgggc
ttcttccgtcgactgagccgtttcttcaccggtcgctga
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