Deinococcus taeanensis: LAJ19_04495
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Entry
LAJ19_04495 CDS
T09106
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
dtae
Deinococcus taeanensis
Pathway
dtae03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
dtae00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
LAJ19_04495
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
dtae03400
]
LAJ19_04495
Enzymes [BR:
dtae01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
LAJ19_04495
DNA repair and recombination proteins [BR:
dtae03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
LAJ19_04495
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
CarD_TRCF_RID
TRCF
ResIII
UvrB_inter
Cas3-like_C_2
Motif
Other DBs
NCBI-ProteinID:
UBV43479
LinkDB
All DBs
Position
929635..932763
Genome browser
AA seq
1042 aa
AA seq
DB search
MTVAAPNLSKLLPAAPPGGLLLLPQVARAALFAAFPGPAVLLTTPDRLGNYVTAGALGAP
VTVNPGLRDWDARHEHVVLDVNTALDLFPARPEDHALTLKVGSSYPREALLARLERLGYE
RGEEPGYELRGDTLELRLTAGAGLPAEAEEGLWVRAEFFGDDLDTLRFLKPGELTGEKAQ
SFTLEPTTEYLTEVKWDATRLDLLPGRVFLDSPEFYASALGVLIDTLWPKLAAREVTSFG
RAPLDLPDLDTGLQPLGFYRARLSDLERDVNEWRAAGYRLLILVRHDRTAAYLADKLLNT
HEIPWLKVPRVREGELGFLRAAGEGGFVIPEHRTVVLTEDLIYGFQGGSALRGKRLSGKP
VTDALGLHVGDYLIHPEHGIGQFEGLETRKVLGVTRDYLNLTYRGGARLSVPIEQLPVLR
RHPGTTDDPPSLSSFDKKDWAKAKEKARRNAEEVAGKLLVQYAARQVTPGNAFPPQPEWD
GQIEQNFKFELTADQKTALKETMRDLEKANPADRLISGDVGFGKTEVALRAAHRVVGHGK
QVAVLVPTTLLAEQHTSTFVERFKGMPVRVEGLSRFTTPQQARAILADTAKGKVDILIGT
HRLLSGDVSFRDLGLIIVDEEHRFGVGQKEKLRALRGLPDVPKDGRLDIPEDVRAVDTLA
LSATPIPRTLYMSMVGLRDMSSIQTPPKGRKPIQTILAPFDPITVRDAILSEIERGGKVF
YIHDRVASIGARSLYLRNLVPEARIGVAHGRMNEEELEEIMLGFEQGAFDVLLATTIVET
GLDIPEANTILIERSDRLGLAQLYQLRGRVGRRAQTAYAYLFYPPRMTENAQRRLWAIAD
LQDLGSGHLLAEKDMEIRGVGNILGEEQHGHVQAVSIDVYTELLAEAVAKLKGEKMEAPV
NISIDLPIDARLTPAYFENDEEARIATYGRLSDSRTLQAISRVERDLRKKYGPPTPEVQN
FIDLAKLRLTAAAKRVLSIGETMTQLQVTFAYKSLDYDAPGLKRFPFRTEVVTFPPSVKL
EKRGVKPDDYARTLIDLLGYFG
NT seq
3129 nt
NT seq
+upstream
nt +downstream
nt
gtgactgttgctgcgccgaacctgtcgaaactgctgcccgccgctccccccggagggctg
ctgctgttgccgcaggtggcccgagcggcgctgttcgccgcatttcccggcccggccgtc
ctgctcaccaccccggaccgcctgggcaactacgtgacggccggcgcgctgggcgccccc
gtgaccgtgaaccccggtctgcgcgactgggacgcccggcatgagcacgtggtcctggac
gtgaacaccgccctggacctgtttcccgctcgcccggaagaccacgccctcaccctgaag
gtcgggtcgagctacccgcgcgaggccctgctcgcccggcttgaacgcctgggctacgaa
cgtggtgaggagccgggctacgaactgcgcggggacacactggagctgcgcctcacggcg
ggcgccgggctgcctgccgaagcagaggaaggcctgtgggtgcgcgccgagttcttcggg
gatgacctggacacactgcggttcctgaagcccggcgaactgaccggcgagaaagcgcag
agtttcacgctggaacccaccacggagtacctgactgaagtgaagtgggacgccacgcgg
ctggacctgctgcccgggcgggtgtttctggactccccggagttctatgcctcggcgctg
ggtgttctgatcgacacgctgtggccgaaactcgcggcgcgggaggtcacgagtttcggc
cgggccccgctggacctgccggacctggacaccggcctgcagcccctgggattctaccgg
gcgcgcctgtcggacctggagcgcgacgtgaacgagtggcgggccgccgggtaccgcctg
ctgatcctcgtccggcatgaccgcaccgccgcgtacctggcggacaagctgctgaacacg
cacgagatcccttggttgaaggtgccgagggtgcgcgagggggaactgggtttcctgcgc
gctgcgggcgagggtgggttcgtgattcccgagcaccggaccgtggtgctgaccgaggac
ctgatctacggcttccaggggggcagcgctctgcgtggcaagcgcctgagcggcaaaccc
gtcacggacgccctgggcctgcacgtcggggattacctgattcacccggagcacggcatc
gggcagttcgagggcctggaaacccggaaggtgctgggcgtcacccgcgactacctgaac
ctcacctaccggggcggcgcgcgcctgagcgtgcccatcgagcagctgcccgtcctgcgc
cggcacccgggcaccaccgatgacccgccaagcctcagctccttcgacaagaaggactgg
gccaaggcgaaagagaaagcccgcaggaacgccgaggaggtcgccgggaaactcctcgtg
cagtacgccgcgcggcaggtcacgcccggcaatgcctttcccccgcagcctgaatgggac
gggcagatcgagcagaacttcaagttcgagctgaccgccgaccagaaaaccgcgctgaaa
gaaacgatgcgcgacctagaaaaagccaacccggccgaccggctgatcagcggcgacgtg
gggttcggcaagaccgaggtggccctgcgcgccgcgcaccgcgtggtggggcatggcaag
caggtggcagtgctggtgccgaccacgcttctcgccgagcagcacaccagcaccttcgtt
gagcgcttcaagggtatgcccgtgcgcgtggagggcctgtcgcgcttcaccacgccgcag
caggccagggcgatcctggccgacacggccaagggcaaggtggacattctcatcggtacg
caccgcctcctgagcggggacgtgagtttccgggacctcgggctgatcatcgtggatgaa
gaacaccgcttcggggtgggccagaaggagaaactccgggcgctgcgcggcctgcctgac
gtgcccaaggacggcaggctggacattcccgaggacgtgcgcgccgtggacacgctggcc
ctgtccgccacgcccattccccgcacgctgtacatgagcatggtcggcctgcgcgacatg
agctccatccagacgcctcccaagggccgcaagcccattcagacgatcctggcacccttc
gacccgatcaccgtgcgtgacgcgatcctcagcgagatcgagcgcggcgggaaggtcttc
tacattcacgaccgtgttgccagcatcggcgcgcgcagcctgtacctgcgtaacctcgtg
ccggaagcccgcatcggggtggcccacggccgcatgaacgaggaggaactcgaggaaatc
atgctgggcttcgagcagggcgccttcgacgtgctgctcgccaccaccatcgtggagacc
ggcctggacatcccggaggcgaacaccatcctgatcgagcgcagcgaccgtctgggcctc
gcgcagctctaccagctgcgtggccgcgtgggccgccgcgcccagaccgcgtacgcctac
ctgttctacccgccccgcatgaccgagaacgcccagcgccgcctgtgggccatcgccgac
cttcaggacctgggcagcgggcacctgctggccgagaaggacatggagatccgcggcgtc
ggtaacatcctcggggaggagcagcacggtcacgtgcaggcggtcagcatcgacgtgtac
accgaactgctcgccgaggccgtcgcgaaactcaagggcgagaagatggaagccccggtg
aacatcagcattgacctgcccatcgacgcccgcctcacccccgcgtacttcgagaacgac
gaggaggcgcgcatcgccacgtacggccgcctctcggacagccgcaccctgcaggcgatc
agccgcgtggaacgcgacctgcgcaagaagtacggcccgcccaccccggaggtgcagaac
ttcatcgacctggccaagctgcgcctcacggccgccgccaagcgggtgctcagcatcggc
gaaaccatgacgcagcttcaggtgacgttcgcctacaagagcctcgactacgacgcgccg
ggcctgaaacgcttccccttcaggacggaggtcgtcacgttccctccctcggtgaagctg
gaaaagcgcggcgtgaaacccgacgattacgcccggaccctcatcgatctgctcgggtac
ttcggctga
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